RetrogeneDB ID: | retro_mmul_1448 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:98113608..98114298(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC7 | ||
Ensembl ID: | ENSMMUG00000020674 | ||
Aliases: | None | ||
Description: | zinc finger, DHHC-type containing 7 [Source:HGNC Symbol;Acc:18459] |
Percent Identity: | 75.54 % |
Parental protein coverage: | 74.84 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | YSVVNGVIFNCLAVLALSSHLRTMLTDPGAVPKGNATKEYMESLQLKPGEVIYKCP-KCCCIKPERAHHC |
YSVVNGVIFN.LA..AL.SHLRTMLTDPGAVP.GNATKEYMESLQLKP.EVIYKCP.KCCCIKPE..HH. | |
Retrocopy | YSVVNGVIFNYLAAFALLSHLRTMLTDPGAVPRGNATKEYMESLQLKPREVIYKCP>KCCCIKPELTHHS |
Parental | SICKRCIRKMDHHCPWVNNCVGEKNQRFFVLFTMYIALSSVHALILCGFQFISCVRG-QWT--GKFPGCV |
SICKR.IRKMDHHC.WVNNCVGEKNQR.F.LFTMYIALSSVHALILCGFQFI.C..G.QWT....F.... | |
Retrocopy | SICKRHIRKMDHHCLWVNNCVGEKNQRCFELFTMYIALSSVHALILCGFQFITCI*G<QWTECSDFSPPF |
Parental | SFLAVHAICSEGLLFFTFTAVMFGTQIHSICNDETEIERLKSEKPTWERRLRWEGMKSVFGGPPSLLWMN |
........C.EGLLFFTFTAV.FGTQIHSICNDE.EI..LKSEKPTWE.RL...G.....G....L.WMN | |
Retrocopy | TVILLTFLCLEGLLFFTFTAVIFGTQIHSICNDEREIQ*LKSEKPTWEWRLPRKG*NQSLG-TLLLPWMN |
Parental | PFVGFRFRRLPTRPRKGGPEFSV |
PFV.F.FRRLP.RPRKGG.EFSV | |
Retrocopy | PFVSFCFRRLPRRPRKGGLEFSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .90 RPM | 24 .88 RPM |
SRP007412_brain_prefrontal_cortex | 1 .11 RPM | 32 .05 RPM |
SRP007412_cerebellum | 1 .74 RPM | 25 .77 RPM |
SRP007412_heart | 0 .06 RPM | 27 .15 RPM |
SRP007412_kidney | 2 .23 RPM | 27 .70 RPM |
SRP007412_liver | 0 .71 RPM | 14 .73 RPM |
SRP007412_testis | 0 .00 RPM | 16 .06 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004119 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016077 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011194 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007373 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020674 | 1 retrocopy |
retro_mmul_1448 ,
|
Sus scrofa | ENSSSCG00000002667 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016028 | 1 retrocopy |