RetrogeneDB ID: retro_mmur_1362

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_48998:4304..4850(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZDHHC7
• Ensembl ID: ENSMICG00000011194
• Aliases: None
• Description: zinc finger, DHHC-type containing 7 [Source:HGNC Symbol;Acc:18459]

Sequence

>retro_mmur_1362
GGGGCAGTGCCCAAAGGAAATGCCACTAAAGAATTCATCGAGAGTTTACAGCTGAAGCCTGGGCAGGTGGTGTACAAGTG
TCCCAAATGCTGCAGCATCAAGCCCGACTGAGCCCACCATTGCAGTGTTTGTAGGCGGTGCATTCACAAGATGGACCACC
ACTGTCCCTGGGTCAATAACTATGTCGGCGAGAACAACCAGAAGTACTTTGTCCTGTTTACAATGTACATAGCTCTCATT
TCCTTGCACACCCTCATCATGGTGGGATTCCACTTCCTGCATTGCTTTGAAGAAGATTGGACAAAGTGCAGCTCCTTCTC
GCTACCCACCACAGTGATCCTCCTCATCCTGCTGTGCTTTGAGGGGCTGCTCTTCCTCATCTTCACGTTGGTGATGTTCG
GGACCCAGGTGCACTCCAACTGCACGGACGAGACGGGCATAGAACAATTGAAAAAGGAAGAGAGAAGATGGGCTAAAAAA
TCAAAATGGATGAACATGAAAGCCGTTTTTGGCCACCCCTTCTCTCTAGGCTGGGCCAGCCCCTTT

Alignment

ORF - retro_mmur_1362 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.58 %
• Parental protein coverage: 53.57 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GAVPKGNATKEYMESLQLKPGEVIYKCPKCCCIKPERAHHCSICKRCIRKMDHHCPWVNNCVGEKNQRFF
          GAVPKGNATKE..ESLQLKPG.V.YKCPKCC.IKP..AHHCS.C.RCI.KMDHHCPWVNN.VGE.NQ..F
Retrocopy GAVPKGNATKEFIESLQLKPGQVVYKCPKCCSIKPD*AHHCSVCRRCIHKMDHHCPWVNNYVGENNQKYF

Parental  VLFTMYIALSSVHALILCGFQFISCVRGQWT-CSDFP-PITVILLIFLCLEGVLFFTFTAVMFGTQIHSI
          VLFTMYIAL.S.H.LI..GF.F..C....WT.CS.F..P.TVILLI.LC.EG.LF..FT.VMFGTQ.HS.
Retrocopy VLFTMYIALISLHTLIMVGFHFLHCFEEDWTKCSSFSLPTTVILLILLCFEGLLFLIFTLVMFGTQVHSN

Parental  CNDETEIERLKSEKPTWERRLRWEGMKSVFGGPPSLLWMNPF
          C.DET.IE.LK.E...W.....W..MK.VFG.P.SL.W..PF
Retrocopy CTDETGIEQLKKEERRWAKKSKWMNMKAVFGHPFSLGWASPF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1362 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1362 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000004119	1 retrocopy	retro_cjac_1437,
Echinops telfairi	ENSETEG00000016077	1 retrocopy	retro_etel_1105,
Microcebus murinus	ENSMICG00000011194	1 retrocopy	retro_mmur_1362 ,
Macaca mulatta	ENSMMUG00000020674	1 retrocopy	retro_mmul_1448,
Sus scrofa	ENSSSCG00000002667	1 retrocopy	retro_sscr_267,
Tursiops truncatus	ENSTTRG00000016028	1 retrocopy	retro_ttru_363,