RetrogeneDB ID: | retro_mmul_1760 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:38405030..38406185(+) | ||
Located in intron of: | ENSMMUG00000001634 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2928 | ||
Ensembl ID: | ENSMMUG00000002863 | ||
Aliases: | None | ||
Description: | protein TFG [Source:RefSeq peptide;Acc:NP_001244729] |
Percent Identity: | 82.95 % |
Parental protein coverage: | 95.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDI--TYDELVLMMQRVFRGKLLSNDEVTIKYKDEDGDLITI |
MNGQL.LSGKLI.KAQLGEDI..IPIHNEDI..TYDELVLMMQRVFRGK.LSN.EVTIKY.D.D.DLITI | |
Retrocopy | MNGQLNLSGKLIMKAQLGEDIPQIPIHNEDINITYDELVLMMQRVFRGKFLSNVEVTIKYNDKDDDLITI |
Parental | FDSSDLSFAIQCSRILKLTLFVNGQPR-PLESSQVKYLRRELIELRNKVNRLLDSLEPPGEPGPSTNIPE |
FDSSDLSFAIQCSR.LKLTLFVNGQPR.PLESSQVKYL.REL.EL.NKVN.LLDSLE.PGEPGPST.IPE | |
Retrocopy | FDSSDLSFAIQCSRTLKLTLFVNGQPR>PLESSQVKYLCRELTEL*NKVNHLLDSLESPGEPGPSTSIPE |
Parental | NDTVDGREEKPAS-DSSGKQSTQVMAASMSAFDPL-KNQDEINKNVMSAFGLTDDQVSGPPSAPAEDRSG |
NDTVD.REEKPAS.DSSGKQ..QVMAASMS.FDPL.KNQDEI..NV.SA.GLTDDQVSG.PSA..ED.SG | |
Retrocopy | NDTVDDREEKPASLDSSGKQYIQVMAASMSVFDPL>KNQDEIKNNVTSASGLTDDQVSGQPSALVEDCSG |
Parental | TPDSI-ASSSSAAHPPGVQPQQPPYTGAQTQAGQIEGQMYQQYQQQAGYG-AQQPQAPPQQPQQYGIQYS |
TPDSI.A.SS.AAHPPGVQPQQPP...A..QAGQ.E.Q.YQQYQQQAGYG..Q..QAPPQQPQQYGIQYS | |
Retrocopy | TPDSIAAASSAAAHPPGVQPQQPPHAEAKIQAGQTESQLYQQYQQQAGYG<SQRLQAPPQQPQQYGIQYS |
Parental | ASYSQQTG-PQQPQQFQGYGQQPTSQAPAPAF-SGQPQQLPAQPPQ-QYQASNYPAQTYTAQTSQPTNYT |
.S.SQQ.G.P.QPQQFQGYGQQPT..APAPAF.SGQPQQLPAQPP..QYQASNYPAQ..T.QTSQPTNYT | |
Retrocopy | TSQSQQNG>PKQPQQFQGYGQQPTT*APAPAF<SGQPQQLPAQPPH<QYQASNYPAQ--TSQTSQPTNYT |
Parental | VAPASQPGMAPSQPG--AYQPRPGFTSLPGSTMTPPPSGPNPY |
VAPASQP.MAPSQPG..AYQPRPGFTSLP.S.MT.PPSGPNPY | |
Retrocopy | VAPASQPRMAPSQPGA*AYQPRPGFTSLPVSSMTLPPSGPNPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 47 .73 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 42 .60 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .76 RPM |
SRP007412_heart | 0 .18 RPM | 34 .21 RPM |
SRP007412_kidney | 0 .12 RPM | 59 .98 RPM |
SRP007412_liver | 0 .00 RPM | 68 .16 RPM |
SRP007412_testis | 0 .04 RPM | 92 .61 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3459 |
Pan troglodytes | retro_ptro_2345 |
Pongo abelii | retro_pabe_2860 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013928 | 1 retrocopy | |
Homo sapiens | ENSG00000114354 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002863 | 1 retrocopy |
retro_mmul_1760 ,
|
Nomascus leucogenys | ENSNLEG00000002849 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000781 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000013597 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015165 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017331 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025779 | 1 retrocopy |