RetrogeneDB ID: | retro_pabe_2860 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:38644098..38644784(+) | ||
Located in intron of: | ENSPPYG00000016567 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TFG | ||
Ensembl ID: | ENSPPYG00000013597 | ||
Aliases: | None | ||
Description: | TRK-fused gene [Source:HGNC Symbol;Acc:11758] |
Percent Identity: | 81.3 % |
Parental protein coverage: | 56.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DSSDLSFAIQCSRILKLTLFVNGHPRPLESSQVKYLRRELIELRNKVNRLLDSLEPPGEPGPSTTIPEND |
...DLSFAIQCSRI.KLTLFVNG.PRPLESSQVKYL.REL.EL.NKVN.LLDSLEPPGEPG.ST.IPEN. | |
Retrocopy | EDDDLSFAIQCSRIPKLTLFVNGQPRPLESSQVKYLCRELTEL*NKVNHLLDSLEPPGEPGLSTNIPENV |
Parental | TVDGREEKSA-SDSSGKQSTQVMAASMSAFDPL-KNQDEINKNVMSAFGLTDDQVSGPPSAPAEDRSGTP |
TV.GREEK.A.SDSSGKQS.QVM.ASMSAFDPL.KNQDEI..NV.SAFGLTDDQVSG.PSA.AED.SGT. | |
Retrocopy | TVNGREEKPASSDSSGKQSIQVMTASMSAFDPL>KNQDEIKNNVTSAFGLTDDQVSGKPSALAEDCSGTS |
Parental | DSIASSSS-AAHPPGVQPQQPPYTGAQTQAGQIEGQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASY |
DSIA.SSS.AAHPPGVQPQQPPYT.A..Q.GQ.E.Q.YQQ.QQQA.YGAQ...APPQQPQQYGIQYS.S. | |
Retrocopy | DSIAASSSVAAHPPGVQPQQPPYTEAKIQGGQTESQLYQQ*QQQASYGAQRLWAPPQQPQQYGIQYSKSQ |
Parental | SQQTGPQ-QPQQFQGYGQQP |
.QQTGPQ.QPQQFQGYGQQP | |
Retrocopy | RQQTGPQ>QPQQFQGYGQQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 22 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 34 .53 RPM |
SRP007412_heart | 0 .03 RPM | 17 .70 RPM |
SRP007412_kidney | 0 .10 RPM | 29 .17 RPM |
SRP007412_liver | 0 .03 RPM | 49 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3459 |
Pan troglodytes | retro_ptro_2345 |
Macaca mulatta | retro_mmul_1760 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013928 | 1 retrocopy | |
Homo sapiens | ENSG00000114354 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002863 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002849 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000781 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000013597 | 1 retrocopy |
retro_pabe_2860 ,
|
Pan troglodytes | ENSPTRG00000015165 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017331 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025779 | 1 retrocopy |