RetrogeneDB ID: | retro_mmul_2559 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:27874677..27875225(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.17959 | ||
Ensembl ID: | ENSMMUG00000005389 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.11 % |
Parental protein coverage: | 82.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKDTDIKRLLYTHLLCIFSIILSVLIPSLFLENFSILETHLTWLCICSGFVTAVNLVLYLAVKPNTSSKR |
MKDT.IKRLLY.HLLC.FSI.L...IPS.FLEN.SILE.HL..LCIC..F.TAVN.VLYL..KPN.SSKR | |
Retrocopy | MKDTGIKRLLYNHLLCVFSISLIIFIPSFFLENSSILEAHLIRLCICCVFLTAVNPVLYLVAKPNASSKR |
Parental | SSLSHKVTRFLKCCIY-FLMSCF--SFHVIFVLYGAPLIELALETFLFAVILSTFTTVPCLCLLGPNLKA |
S..SHKVT.FLKCCI..FLMSCF....HVIFVLYG.P..EL..ETFLF.VILS.FTT.P.L.LLGPNLKA | |
Retrocopy | SLSSHKVTGFLKCCIN<FLMSCFLHVIHVIFVLYGVPPLELKMETFLFVVILSAFTTLPSLFLLGPNLKA |
Parental | WLRVFSRNGVSSIWENSLQMTTISSFVGAWLGALPIPLDWERPW |
W.RVF....V...WENS.Q.TTISSFV...LG.L.IPLD..RPW | |
Retrocopy | WIRVFTGKRVIFTWENSVQITTISSFVATCLGVLSIPLDGKRPW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 12 .89 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .87 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .79 RPM |
SRP007412_heart | 0 .00 RPM | 24 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 20 .89 RPM |
SRP007412_liver | 0 .00 RPM | 6 .21 RPM |
SRP007412_testis | 0 .00 RPM | 12 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4801 |
Pan troglodytes | retro_ptro_3192 |
Gorilla gorilla | retro_ggor_2988 |
Pongo abelii | retro_pabe_3733 |
Callithrix jacchus | retro_cjac_4146 |