RetrogeneDB ID: | retro_acar_103 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 3:194924345..194924681(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGF | ||
Ensembl ID: | ENSACAG00000028483 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class F [Source:HGNC Symbol;Acc:8962] |
Percent Identity: | 88.39 % |
Parental protein coverage: | 51.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SVLETFLFAVLLSTFTTLHCLCLLGPNIHVWLRVFSKNGAMSIWDNNLQITSMCSVVGAWLGAFPIPLDW |
SVLETFLFAV.LSTFTTLHCLCLLGPNIHVWLRVFSKN.AMS.W.NNLQI.SMCSVVGAWLG.FPIPLDW | |
Retrocopy | SVLETFLFAVFLSTFTTLHCLCLLGPNIHVWLRVFSKNVAMSSWYNNLQIASMCSVVGAWLGDFPIPLDW |
Parental | DRPWQVWPISCSLGATLGYVSGLLFAPLWIYWNRKKLTYKSR |
DRP..V.P.S.SLGATLGYVSGLLFAPLWIYWNR.KLTYKS. | |
Retrocopy | DRPC*V*PNSRSLGATLGYVSGLLFAPLWIYWNRMKLTYKSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 18 .77 RPM |
SRP009831_brain | 0 .00 RPM | 15 .57 RPM |
SRP009831_dewlap | 0 .04 RPM | 40 .16 RPM |
SRP009831_embryo | 0 .00 RPM | 22 .11 RPM |
SRP009831_heart | 0 .00 RPM | 11 .10 RPM |
SRP009831_liver | 0 .00 RPM | 12 .31 RPM |
SRP009831_lung | 0 .00 RPM | 6 .10 RPM |
SRP009831_ovary | 0 .00 RPM | 39 .19 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 7 .07 RPM |