Parental gene:

PIGF, ENSCJAG00000000680

Aliases:None
Description:phosphatidylinositol glycan anchor biosynthesis, class F [Source:HGNC Symbol;Acc:8962]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:61232289..61269473(+)


>ENSCJAG00000000680
ATGAAAGATACCGATATCAAAAGACTACTGTATACCCATCTTTTATGCATATTTTCAATTATCCTAAGTGTCTTCATTCC
ATCACTGTGCTTGGAGAACTTCTCATTATTGGAAACACACTTGACATGGTTGTGCACCTGTTCTGGTTTTGTAACTGCTG
TCAATCTAGTACTATATTTAGTAGTGAAACCAAATGCATCCTCTAAAAGAAGTTCATTATCACACAAGGTAACCAGATTT
TTGAAGTGCTGTATCTACTTTCTTATGTCTTGTTTCTCCTTTCATGTAATTTTTGTTCTATATGGAGCACCACTAATAGA
GTTGGCATTGGAAACATTTTTATTTGCAGTTATTTTGTCTACTTTTACTACCGTACCTTGCTTATGTTTGTTAGGACCAA
ATCTCAAAGCATGGCTAAGAGTTTTCAGTAGAAATGGAGTTACATCCATATGGGAGAATAGTCTCCAGATCACTACAATT
TCTAGTTTTGTAGGAGCATGGCTTGGAGCACTTCCTATTCCACTGGATTGGGAAAGACCATGGCAGGTATGGCCCATCTC
CTGTACGCTTGGAGCGACCTTTGGCTACGTGGCTGGCCTTGTTATTTCACCACTCTGGATATACTGGAATAGAAAGCAAC
TTACATACAAGAACAATTAA

Library Parental gene expression (RPM)
SRP051959_colon 3 .22 RPM
SRP051959_heart 3 .24 RPM
SRP051959_kidney 5 .08 RPM
SRP051959_liver 2 .49 RPM
SRP051959_lung 3 .40 RPM
SRP051959_lymph_node 2 .26 RPM
SRP051959_skeletal_muscle 2 .75 RPM
SRP051959_spleen 2 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000028483 ortholog_one2one 1 retrogene
retro_acar_103,
Dasypus novemcinctus ENSDNOG00000007278 ortholog_one2many 2 retrogenes
retro_dnov_1980, retro_dnov_502,
Dasypus novemcinctus ENSDNOG00000025474 ortholog_one2many 1 retrogene
retro_dnov_602,
Dipodomys ordii ENSDORG00000006083 ortholog_one2one 1 retrogene
retro_dord_234,
Homo sapiens ENSG00000151665 ortholog_one2one 3 retrogenes
retro_hsap_3277, retro_hsap_4217, retro_hsap_4801,
Gorilla gorilla ENSGGOG00000024478 ortholog_one2one 3 retrogenes
retro_ggor_2229, retro_ggor_2825, retro_ggor_2988,
Myotis lucifugus ENSMLUG00000008686 ortholog_one2one 1 retrogene
retro_mluc_1471,
Macaca mulatta ENSMMUG00000005389 ortholog_one2one 2 retrogenes
retro_mmul_1173, retro_mmul_2559,
Monodelphis domestica ENSMODG00000000968 ortholog_one2one 1 retrogene
retro_mdom_1771,
Mustela putorius furo ENSMPUG00000012037 ortholog_one2many 1 retrogene
retro_mputfur_810,
Nomascus leucogenys ENSNLEG00000016924 ortholog_one2one 3 retrogenes
retro_nleu_1115, retro_nleu_1455, retro_nleu_2882,
Oryctolagus cuniculus ENSOCUG00000001130 ortholog_one2many 1 retrogene
retro_ocun_618,
Otolemur garnettii ENSOGAG00000026734 ortholog_one2one 1 retrogene
retro_ogar_1699,
Pongo abelii ENSPPYG00000012438 ortholog_one2one 3 retrogenes
retro_pabe_2710, retro_pabe_3450, retro_pabe_3733,
Pan troglodytes ENSPTRG00000011895 ortholog_one2one 2 retrogenes
retro_ptro_2863, retro_ptro_3192,
Ictidomys tridecemlineatus ENSSTOG00000001373 ortholog_one2one 1 retrogene
retro_itri_989,
Tupaia belangeri ENSTBEG00000000891 ortholog_one2one 1 retrogene
retro_tbel_3809,
Tarsius syrichta ENSTSYG00000002842 ortholog_one2one 3 retrogenes
retro_tsyr_1497, retro_tsyr_1556, retro_tsyr_1820,
Vicugna pacos ENSVPAG00000000314 ortholog_one2one 1 retrogene
retro_vpac_478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_481 57.85 100.00
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2. retro_cjac_4146 65.22 82.65
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Download FASTA sequences of all ENSCJAG00000000680 retrocopies