RetrogeneDB ID: | retro_ocun_618 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:84657665..84658038(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000001130 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.72 % |
Parental protein coverage: | 57.53 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PSFFLESFSILETHLTWLGICSVSVTAV-NLVLYLVVKPNVSSKRSSSS-HKVARFLKCCIYFLMSCFSF |
P.FFLE..S.L..HLT.L.IC.V.V.A...L.LYLV.K.N.....S..S..KVARFLKC..YFLMSCF.. | |
Retrocopy | P*FFLENYSVLQSHLT*LCICFVFVSAI<HLELYLVKKKNTNAS-STRS<YKVARFLKCGVYFLMSCFTC |
Parental | HVIFVLYGAPLIELVLETFLFAVILSTFTTVPCLCLLGPNLKAWLRVFSRNGVSSIWE |
HVIF.LY.A..IE.VLE.FLF.VIL.TF.TVPCLCLLGPNLKAWL.......VS...E | |
Retrocopy | HVIFGLYEATVIESVLEVFLFVVILFTFITVPCLCLLGPNLKAWLSFQ*KWSVSHLGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .20 RPM |
SRP017611_liver | 0 .00 RPM | 1 .39 RPM |