RetrogeneDB ID: | retro_mmul_2637 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:130355222..130356489(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000003480 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AGK | ||
Ensembl ID: | ENSMMUG00000021017 | ||
Aliases: | None | ||
Description: | acylglycerol kinase, mitochondrial [Source:RefSeq peptide;Acc:NP_001247490] |
Percent Identity: | 86.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MTVFFKTLRNHWKKTTAGLCLLTWGGHWLYGKHCDNLLRRAACQEAQEFGNQLIPPNAQVKKATVFLNPA |
MTV.FKTL.NHWKK..AGLCLLTWGG.WLYGKHCDNLLRRAAC.EAQ.FGNQLIP.NAQVKK.TVFLNPA | |
Retrocopy | MTV*FKTLQNHWKKAIAGLCLLTWGGQWLYGKHCDNLLRRAACEEAQVFGNQLIPSNAQVKKETVFLNPA |
Parental | ACKGKARTLFEKNAAPILHLS-GMDVTIVKTDYEGQAKKLLELMENTDVIIVAGGDGTLQEVVTGVLRRT |
ACKGKARTLFEKNAA.ILHLS.G..VTIVK.DYE.QAKK.LELMENT.VIIVAGGDGTLQEVVTGVLR.T | |
Retrocopy | ACKGKARTLFEKNAALILHLS>GIGVTIVKADYEVQAKKFLELMENTYVIIVAGGDGTLQEVVTGVLRQT |
Parental | DEATFSKIPIGFIPLGETSSLSHTLFAESGNKVQHITDATLAIVKGETVPLDVLQIKGEKEQPVFAMTGL |
DEATFSKIPIGFIPLGETSSLSH.L..ESG.K.QHITDATLAIV.GETVP.DVLQIKGEKEQPVFAMTGL | |
Retrocopy | DEATFSKIPIGFIPLGETSSLSHNLLTESGSKLQHITDATLAIVNGETVPFDVLQIKGEKEQPVFAMTGL |
Parental | RWGSFRDAGVKVSKYWYLGPLKIKAAHFFSTLKEWPQTHQASISYTGPTERPPSEPEETPVQRPSLYRRI |
.WGSFRDAG.KVS.Y.YLGPLKI..AHFFSTLKEWPQT...SI.Y.GPTERPP.EP.ETPVQRP.LYRRI | |
Retrocopy | *WGSFRDAGIKVSRY*YLGPLKINVAHFFSTLKEWPQTRETSILYMGPTERPPNEPKETPVQRPFLYRRI |
Parental | LRRLASYWAQPQDALSQEVSPEVWKDVQLSTIELSITTRNNQLDPTSKEDFLNICIEPDTISKGDFITIG |
LRRL.SYWAQPQDALSQEVS.E.WKDVQLSTIELSITT.NNQLDPT.KEDF.NICIE.DTISKG.FITIG | |
Retrocopy | LRRLTSYWAQPQDALSQEVSREIWKDVQLSTIELSITTQNNQLDPTRKEDFMNICIEADTISKGIFITIG |
Parental | SRKVRNPKLHAEGTECLQASRCTLLVPEGAGGSFSIDSEEYEAMPVEVKLLPRKLQFFCDPRKREQMLAS |
SRKVRN.KL.AEG..CLQAS.CTLLVPEGAG..FSIDSEEYE.MPVEVKLLPR.L.FFCDPRKREQMLAS | |
Retrocopy | SRKVRNAKLDAEGMKCLQASQCTLLVPEGAGSTFSIDSEEYEVMPVEVKLLPRNLPFFCDPRKREQMLAS |
Parental | PTQ |
PTQ | |
Retrocopy | PTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 43 .14 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 36 .81 RPM |
SRP007412_heart | 0 .00 RPM | 10 .78 RPM |
SRP007412_kidney | 0 .12 RPM | 22 .42 RPM |
SRP007412_liver | 0 .04 RPM | 8 .39 RPM |
SRP007412_testis | 0 .00 RPM | 9 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4903 |
Pan troglodytes | retro_ptro_3269 |
Gorilla gorilla | retro_ggor_3061 |
Pongo abelii | retro_pabe_3812 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000013589 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008821 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002479 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002561 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021017 | 1 retrocopy |
retro_mmul_2637 ,
|
Mus musculus | ENSMUSG00000029916 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002291 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018064 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019775 | 2 retrocopies |