RetrogeneDB ID: | retro_nleu_2349 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397347.1:129891..131155(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AGK | ||
Ensembl ID: | ENSNLEG00000002291 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | MTVFFKTLRNHWKKTTAGLCLLTWGGHWLYGKHCDNLLRRAACQEAQVFGNQLIPPNAQVKKATVFLNPA |
M.V.F.TL.NHWKK.TAGLCLLTWGG.WLYGKHCDNLLRRAAC.EAQVFGNQLIPPNAQVKK..VFLNPA | |
Retrocopy | MAVLF*TLQNHWKKATAGLCLLTWGGQWLYGKHCDNLLRRAACEEAQVFGNQLIPPNAQVKKESVFLNPA |
Parental | ACKGKARTLFEKNAAPILHLS-GMDVTIVKTDYEGQAKKLLELMENTDVIIVAGGDGTLQEVVTGVLRRT |
ACKGKAR.LFEKNAAPILHLS.G..VTIVKTDYEGQAKKLLEL.ENT.VIIVAGGDGTLQEVVTGVLR.T | |
Retrocopy | ACKGKARILFEKNAAPILHLS>GIGVTIVKTDYEGQAKKLLELIENT*VIIVAGGDGTLQEVVTGVLR*T |
Parental | DEATFSKIPIGFIPLGETSSLSHTLFAESGNKVQHITNATLAIVKGETVPLDVLQIKGEKEQPVFAMTGL |
DEATFSKIPI.FIPLGETSSLSH.LF.ESGNKVQHIT.ATLAIV.GETVP.DVLQIKGEKEQPVFAMTGL | |
Retrocopy | DEATFSKIPIRFIPLGETSSLSHNLFTESGNKVQHITDATLAIVNGETVPFDVLQIKGEKEQPVFAMTGL |
Parental | RWGSFRDAGVKVSKYWYLGPLKIKAAHFFSTLKEWPQTHQASISYTGPTERPPSEPEETPVQRPSLYRRI |
.WGSFRDAG.KVS.Y.YLGPLKIKAAHFFSTLKEWPQTH..SISYTGPTERP..EPEETPVQRPSLYRRI | |
Retrocopy | *WGSFRDAGIKVSRY*YLGPLKIKAAHFFSTLKEWPQTHETSISYTGPTERPANEPEETPVQRPSLYRRI |
Parental | LRRLASYWAQPQDALSQEVSPEVWKDVQLSTIELSITTRNNQLDPTSKEDFLNICIEPDTISKGDFITIG |
L.RLASYWAQPQDALSQEVS.EVWKDVQLSTIELSI.TRNNQLD.T.K.DF.NICIE..T.SKGDF.TI. | |
Retrocopy | LQRLASYWAQPQDALSQEVSREVWKDVQLSTIELSIITRNNQLDRTRK-DFMNICIEANTVSKGDFVTIR |
Parental | SRKVRNPKLHAEGTECLQASQCTLLIPEGAGGSFSIDSEEYEAMPVEVKLLPRKLQFFCDPRKREQMLTS |
SRKVR..KL..EG.ECLQASQ.T.L.P..AG.SFSIDSEEYE.MPVEVKLLPRKLQFFCDPRKREQML.S | |
Retrocopy | SRKVRKAKLDTEGMECLQASQYTSLVPKEAGSSFSIDSEEYEVMPVEVKLLPRKLQFFCDPRKREQMLAS |
Parental | PTQ |
PTQ | |
Retrocopy | PTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000013589 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008821 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002479 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002561 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021017 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029916 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002291 | 1 retrocopy |
retro_nleu_2349 ,
|
Pongo abelii | ENSPPYG00000018064 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019775 | 2 retrocopies |