RetrogeneDB ID: | retro_mmul_394 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:95714463..95714909(+) | ||
Located in intron of: | ENSMMUG00000005070 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZFAND1 | ||
Ensembl ID: | ENSMMUG00000002626 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.52 % |
Parental protein coverage: | 55.6 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | QHTSYPCSFKDCAERELVAVICPHCEKNFCLRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETA |
.H..YPCSFK...ERELVAVI.P.CE.NF.LRH.HQSDH.CEKLEIPKP..AATQKLVKDI.DSKTGETA | |
Retrocopy | RHKFYPCSFKGRVERELVAVIHPYCENNFFLRHHHQSDHKCEKLEIPKPYTAATQKLVKDI-DSKTGETA |
Parental | SKRRKGAKNSETAAK-VALMKLKMHADGDKSLPQTERIYFQVFLPKGSKEKSKPMFFC-HRWSIGKAIDF |
SK..KG.K......K..ALMKL....DGDKSLPQ...I.FQVFLPKGSKEK.KPMFF..H..SI.K..DF | |
Retrocopy | SKQGKGDKK**NSCKGIALMKLRIYNDGDKSLPQA*SICFQVFLPKGSKEKGKPMFFS<HG*SIKKVTDF |
Parental | AASLASLKNDN |
AASLASLK.DN | |
Retrocopy | AASLASLKDDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 20 .62 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 11 .98 RPM |
SRP007412_cerebellum | 0 .26 RPM | 24 .67 RPM |
SRP007412_heart | 0 .18 RPM | 6 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 15 .38 RPM |
SRP007412_liver | 0 .08 RPM | 6 .21 RPM |
SRP007412_testis | 0 .19 RPM | 3 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_187 |
Gorilla gorilla | retro_ggor_268 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014075 | 1 retrocopy | |
Homo sapiens | ENSG00000104231 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023665 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016889 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002626 | 1 retrocopy |
retro_mmul_394 ,
|
Mus musculus | ENSMUSG00000039795 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002584 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009813 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015393 | 1 retrocopy |