RetrogeneDB ID: retro_mmur_1073

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_19984:8793..9209(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZFAND1
• Ensembl ID: ENSMICG00000016889
• Aliases: None
• Description: zinc finger, AN1-type domain 1 [Source:HGNC Symbol;Acc:25858]

Sequence

>retro_mmur_1073
CTTCCATTTGCATATGGTGGTTGTCCAGGAATATTTTGCCTTGAACATGGAAACAGGGAGTCTCACTGTTGTCCTGAGGT
GACTATAATCAATGAGCAACTAAAGACAGATAAACATAAATCTTACCCATGCCCATTCAAGGACTGTACAGAAAGAGAAT
TTGTGACAGTTATATGTCCTTATTGTGAGAATTTTTGCCCGAGACACTGTCCTTAGTCAGATCATGAGTGTGAAAAACTG
GAAATCCCAAAGTCTGGTATGAGTCCCACTCAGAAAGTTGTCAAAGACATTATTGATTCCAAGGCAGAAAAGACAGCAGG
CAAATGATGGAAAGGTGCAAAAAATGGTGAAATAGTTGTAAGGTTGCACTGATGAAATTAAAGATGCATGCTAATGGGGT
TAAGTCATTGCCACAG

Alignment

ORF - retro_mmur_1073 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.34 %
• Parental protein coverage: 56.22 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LPFICDGCSGIFCLEHRSRESHGCSEVTIINERLKTDEHKSYRCSFKDCAERELVAVICPYCEKNFCLRH
          LPF...GC.GIFCLEH..RESH.C.EVTIINE.LKTD.HKSY.C.FKDC.ERE.V.VICPYCE.NFC.RH
Retrocopy LPFAYGGCPGIFCLEHGNRESHCCPEVTIINEQLKTDKHKSYPCPFKDCTEREFVTVICPYCE-NFCPRH

Parental  RHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETTSKRRKGAKNSE-TAAKVALMKLKMHADGDKSLP
          ...SDHECEKLEIPK..M..TQK.VKDIIDSK...T..K..KGAKN.E....KVALMKLKMHA.G.KSLP
Retrocopy CP*SDHECEKLEIPKSGMSPTQKVVKDIIDSKAEKTAGK*WKGAKNGE<NSCKVALMKLKMHANGVKSLP

Parental  Q
          Q
Retrocopy Q

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1073 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1073 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000014075	1 retrocopy	retro_cpor_312,
Homo sapiens	ENSG00000104231	1 retrocopy	retro_hsap_187,
Gorilla gorilla	ENSGGOG00000023665	1 retrocopy	retro_ggor_268,
Microcebus murinus	ENSMICG00000016889	1 retrocopy	retro_mmur_1073 ,
Macaca mulatta	ENSMMUG00000002626	1 retrocopy	retro_mmul_394,
Mus musculus	ENSMUSG00000039795	1 retrocopy	retro_mmus_2093,
Nomascus leucogenys	ENSNLEG00000002584	1 retrocopy	retro_nleu_997,
Otolemur garnettii	ENSOGAG00000009813	2 retrocopies	retro_ogar_2608, retro_ogar_514,
Tupaia belangeri	ENSTBEG00000015393	1 retrocopy	retro_tbel_3648,