RetrogeneDB ID: | retro_nleu_997 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397278.1:25339723..25340163(+) | ||
Located in intron of: | ENSNLEG00000010486 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZFAND1 | ||
Ensembl ID: | ENSNLEG00000002584 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.33 % |
Parental protein coverage: | 55.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | QHTSFPCSFKDCAERELVAVICPYCEKNFCLRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKIGETA |
.H....CSFKD..E..LVAVI.PYCE.NFCLRH.HQSDH.CEKLEIPKP.MAATQKLVKDI.DSK.GETA | |
Retrocopy | KHKFYLCSFKDRVEK-LVAVIRPYCENNFCLRHHHQSDHKCEKLEIPKPYMAATQKLVKDI-DSKTGETA |
Parental | SKRRKGAKNSETAAKVALMKLKMHADGDKSVPQTERIYLQVFLPKGSKEKRKAMFFC-HRWSIGKAIDFA |
SK..KG.K......K....KL...ADGDKS.PQ.E.I..QVFLPKGSKEK.K.MFF..H..SI.K..DFA | |
Retrocopy | SKQGKGDKK**NSCKGIALKLRIYADGDKSLPQEESICFQVFLPKGSKEKGKPMFFS<HG*SIRKVTDFA |
Parental | ASLARLKNDN |
.SLA.LK.DN | |
Retrocopy | TSLASLKDDN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014075 | 1 retrocopy | |
Homo sapiens | ENSG00000104231 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023665 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016889 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002626 | 1 retrocopy | |
Mus musculus | ENSMUSG00000039795 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002584 | 1 retrocopy |
retro_nleu_997 ,
|
Otolemur garnettii | ENSOGAG00000009813 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015393 | 1 retrocopy |