RetrogeneDB ID: retro_ogar_514

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873522.1:23260307..23260700(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZFAND1
• Ensembl ID: ENSOGAG00000009813
• Aliases: None
• Description: zinc finger, AN1-type domain 1 [Source:HGNC Symbol;Acc:25858]

Sequence

>retro_ogar_514
TTTCTTCCATTTATTTGTGATGGAATACTCTACCTTGAACATAGAAGCAAGGAGTTTATGATTTTCCTGAGGTGACTATA
ATCAATGAAAAACTAAAGACAGATGAGCATAAGTCTTACCCATGCTGATTCAAGGACTGTGTTGAAAGAGAACTTGCGGC
AGTTACATAATCTTATTGTGGAAACTTTTGCCTAAGACACTATCATCAGTCAGATCACGAATGTAAAAAACTGGAAATCC
TAAAGCCTCATATAGCCGCCACCCAAAAACTTCTTAAAGACATTATTGAGTCCAAGACAACAAGTAAACGATAAAAAAGG
TGCAAAAAATAGTGAAACAGCTACAAAAATTCCATTGATGAAATTAAAGATTCATGCTGATGGGGGTGACTCT

Alignment

ORF - retro_ogar_514 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.14 %
• Parental protein coverage: 51.49 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FLPFICDGCSGIFCLEHRSKES-HGCPEVTIINERLKTDNHKSYPCSFKDCGERELVAVLCPYCEKNFCL
          FLPFICD...GI..LEHRSKE.....PEVTIINE.LKTD.HKSYPC.FKDC.EREL.AV...YC..NFCL
Retrocopy FLPFICD---GILYLEHRSKEF<YDFPEVTIINEKLKTDEHKSYPC*FKDCVERELAAVT*SYCG-NFCL

Parental  RHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETTSKR-RKGAKNSQTAAKVALMKLKMHADGDKS
          RH.HQSDHEC.KLEI.KP..AATQKL.KDII.SKT...TSKR..KGAKNS.TA.K..LMKLK.HADG..S
Retrocopy RHYHQSDHECKKLEILKPHIAATQKLLKDIIESKT---TSKR>KKGAKNSETATKIPLMKLKIHADGGDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_514 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000014075	1 retrocopy	retro_cpor_312,
Homo sapiens	ENSG00000104231	1 retrocopy	retro_hsap_187,
Gorilla gorilla	ENSGGOG00000023665	1 retrocopy	retro_ggor_268,
Microcebus murinus	ENSMICG00000016889	1 retrocopy	retro_mmur_1073,
Macaca mulatta	ENSMMUG00000002626	1 retrocopy	retro_mmul_394,
Mus musculus	ENSMUSG00000039795	1 retrocopy	retro_mmus_2093,
Nomascus leucogenys	ENSNLEG00000002584	1 retrocopy	retro_nleu_997,
Otolemur garnettii	ENSOGAG00000009813	2 retrocopies	retro_ogar_2608, retro_ogar_514 ,
Tupaia belangeri	ENSTBEG00000015393	1 retrocopy	retro_tbel_3648,