RetrogeneDB ID: | retro_mmul_613 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:64759491..64760083(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000013177 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMED2 | ||
Ensembl ID: | ENSMMUG00000031491 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIY |
MVTLA.LLVLLAALLA.VSGYF.SI..HAEECFFE.V.SGTKMGLI.EV.EGGFLDI.VEI.GPDNKGIY | |
Retrocopy | MVTLADLLVLLAALLAMVSGYFISINPHAEECFFEWVASGTKMGLISEVVEGGFLDINVEIIGPDNKGIY |
Parental | KGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVA |
.GD.ESSGKYTFAAHMD.....CFSNRMSTMTPKIVMFTID.GEAPKGQDME..AHQN.LEEMI.ELAVA | |
Retrocopy | RGDGESSGKYTFAAHMDS--EVCFSNRMSTMTPKIVMFTIDTGEAPKGQDMEKAAHQNNLEEMISELAVA |
Parental | MTAVKHEQEYMEV-RERIHRAINDNTNSRVVLWSSLKL-FVLVAMTLGQIYYLKRFFEVRRVV |
MTA.KH.QEYME..RERIH.AIN.NTNSRVVLW.SLKL..VLVAMTLGQIYYLK.FFEV.R.. | |
Retrocopy | MTAGKHKQEYMEI<RERIHGAINNNTNSRVVLW-SLKL<LVLVAMTLGQIYYLKSFFEVQRLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 74 .74 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 54 .50 RPM |
SRP007412_cerebellum | 1 .55 RPM | 66 .77 RPM |
SRP007412_heart | 0 .65 RPM | 76 .02 RPM |
SRP007412_kidney | 1 .06 RPM | 98 .82 RPM |
SRP007412_liver | 0 .59 RPM | 86 .49 RPM |
SRP007412_testis | 0 .98 RPM | 35 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015262 | 2 retrocopies | |
Bos taurus | ENSBTAG00000039630 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012728 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000020466 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000556 | 2 retrocopies | |
Homo sapiens | ENSG00000086598 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028536 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000031491 | 2 retrocopies |
retro_mmul_1439, retro_mmul_613 ,
|
Mustela putorius furo | ENSMPUG00000001598 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029390 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001652 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009192 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005090 | 3 retrocopies |