Parental gene:

TMED2, ENSCJAG00000020466

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:114489051..114504192(+)


>ENSCJAG00000020466
ATGGTGACGGTTGCTGAACTGCTGGTGCTCCTGGCCGCTCTCCTGGCCACCGTCTCAGGCTACTTCGTTAGCATCGACGC
GCATGCCGAGGAGTGCTTCTTTGAGCGGGTCACCTCGGGCACCAAGATGGGCCTCATCTTCGAGGTGGCGGAGGGCGGCT
TCCTGGACATCGACGTGGAGATTACAGGACCAGATAATAAAGGGATTTACAAAGGAGACCGAGAATCCAGTGGGAAATAC
ACATTTGCTGCTCACATGGACGGAATATACAAATTTTGTTTTAGTAACCGGATGTCTACCATGACTCCAAAAATAGTGAT
GTTCACCATTGATGGGGAGGCTCCGAAAGGGCAAGACATGGAAACAGAAGGGGATCACCAGAACAAGTTGAAGAAAATGA
TCAACAGTGTTGAGCTGGCAGTGGCAATGACAGCTGTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGGATACAC
AGAGCCATCAACGACAACACAAACAGCAGAGTGGTCCTTTGGTCCTTCTTTGAAGCTCTTGTTCTAGTTGCCATGACATT
GGGACAGATCTACTACCTGAAGAGATTTTTTGAAGTCCGGAGGGTTGTTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 103 .53 RPM
SRP051959_skeletal_muscle 106 .88 RPM
SRP051959_lymph_node 73 .08 RPM
SRP051959_lung 74 .93 RPM
SRP051959_liver 193 .93 RPM
SRP051959_kidney 110 .78 RPM
SRP051959_heart 78 .33 RPM
SRP051959_colon 115 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015262 ortholog_one2one 2 retrogenes
retro_amel_1923, retro_amel_337,
Bos taurus ENSBTAG00000039630 ortholog_one2one 2 retrogenes
retro_btau_52, retro_btau_819,
Choloepus hoffmanni ENSCHOG00000012728 ortholog_one2one 6 retrogenes
retro_chof_104, retro_chof_1277, retro_chof_2323, retro_chof_2601, retro_chof_2709, retro_chof_981,
Echinops telfairi ENSETEG00000000556 ortholog_one2one 2 retrogenes
retro_etel_2109, retro_etel_2154,
Homo sapiens ENSG00000086598 ortholog_one2one 1 retrogene
retro_hsap_2793,
Gorilla gorilla ENSGGOG00000028536 ortholog_one2one 1 retrogene
retro_ggor_1943,
Macaca mulatta ENSMMUG00000031491 ortholog_one2one 2 retrogenes
retro_mmul_1439, retro_mmul_613,
Mustela putorius furo ENSMPUG00000001598 ortholog_one2one 1 retrogene
retro_mputfur_1241,
Mus musculus ENSMUSG00000029390 ortholog_one2one 2 retrogenes
retro_mmus_1361, retro_mmus_3262,
Nomascus leucogenys ENSNLEG00000001652 ortholog_one2one 2 retrogenes
retro_nleu_2454, retro_nleu_2794,
Otolemur garnettii ENSOGAG00000009192 ortholog_one2one 1 retrogene
retro_ogar_2548,
Pongo abelii ENSPPYG00000005090 ortholog_one2one 3 retrogenes
retro_pabe_1919, retro_pabe_2227, retro_pabe_3597,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1392 68.94 79.21
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Download FASTA sequences of all ENSCJAG00000020466 retrocopies