RetrogeneDB ID: | retro_mmul_626 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:33021623..33022166(-) | ||
Located in intron of: | ENSMMUG00000005119 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.17996 | ||
Ensembl ID: | ENSMMUG00000009043 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MFXXFDEKENVSNCIQLKTSVIKGIKNQLIEQFPGIEPWLNQIMPKKDPVKIVRCHEHIEILTVNGELLF |
MF..FDEKE.VSNCIQLKTSVIKGIK.QL.EQFPGIEPWLNQIMPKKDPVKIVRCHEH.EILTV.GELLF | |
Retrocopy | MFKKFDEKESVSNCIQLKTSVIKGIKSQLVEQFPGIEPWLNQIMPKKDPVKIVRCHEHTEILTVSGELLF |
Parental | FRQREGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAEGKQ |
FRQR.GPF.PTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVA..AEGKQ | |
Retrocopy | FRQRKGPFCPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAVTAEGKQ |
Parental | HALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK |
HALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK | |
Retrocopy | HALCVGVMKMSAEDIEKVNKGIGIENIHYLNDGLWHMKTYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .90 RPM | 10 .53 RPM |
SRP007412_brain_prefrontal_cortex | 0 .87 RPM | 6 .03 RPM |
SRP007412_cerebellum | 1 .61 RPM | 8 .39 RPM |
SRP007412_heart | 0 .53 RPM | 6 .48 RPM |
SRP007412_kidney | 0 .70 RPM | 9 .39 RPM |
SRP007412_liver | 0 .44 RPM | 7 .01 RPM |
SRP007412_testis | 2 .90 RPM | 1 .28 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000034992 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018545 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005502 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015462 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009043 | 1 retrocopy |
retro_mmul_626 ,
|
Monodelphis domestica | ENSMODG00000010354 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001407 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000355 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015021 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000014315 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011496 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000001801 | 1 retrocopy |