RetrogeneDB ID: | retro_mmul_86 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:66191669..66191960(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000032435 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEC61B | ||
Ensembl ID: | ENSMMUG00000010661 | ||
Aliases: | None | ||
Description: | protein transport protein Sec61 subunit beta [Source:RefSeq peptide;Acc:NP_001253867] |
Percent Identity: | 98.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPGPTPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGP |
MPGPTPSGTNVGSSG.SPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGP | |
Retrocopy | MPGPTPSGTNVGSSGLSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGP |
Parental | VPVLVMSLLFIASVFMLHIWGKYTRS |
VPVLVMSLLFIASVFMLHIWGKYTRS | |
Retrocopy | VPVLVMSLLFIASVFMLHIWGKYTRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .69 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 11 .34 RPM |
SRP007412_cerebellum | 0 .06 RPM | 2 .07 RPM |
SRP007412_heart | 0 .00 RPM | 3 .77 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .28 RPM |
SRP007412_liver | 0 .04 RPM | 28 .03 RPM |
SRP007412_testis | 0 .04 RPM | 7 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002457 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000011279 | 1 retrocopy | |
Equus caballus | ENSECAG00000026930 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005293 | 4 retrocopies | |
Homo sapiens | ENSG00000106803 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004205 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000321 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011121 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000001097 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010661 | 1 retrocopy |
retro_mmul_86 ,
|
Mus musculus | ENSMUSG00000053317 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017055 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004168 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000019441 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021184 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006345 | 1 retrocopy |