RetrogeneDB ID: | retro_mmur_1062 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_18351:5785..6210(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDHB | ||
Ensembl ID: | ENSMICG00000016629 | ||
Aliases: | None | ||
Description: | succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:HGNC Symbol;Acc:10681] |
Percent Identity: | 91.61 % |
Parental protein coverage: | 55.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KAGDKPRMQTYEIDLNKCGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTN |
KAGDKPRMQTYEIDLNKCGPMVLDALIKIKNEIDSTLTFRRSCREGIC.SCA.NINGGNTL.CT.RIDT. | |
Retrocopy | KAGDKPRMQTYEIDLNKCGPMVLDALIKIKNEIDSTLTFRRSCREGICSSCATNINGGNTLTCT*RIDTT |
Parental | LNKVSKIYPLPHMYVIKDL-VPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILC |
LNKVSKIYPLPHMYVIKDL.VPDL.NFYAQYK..EPYLKKKDESQEGKQQYLQS.ED.EKLDGLY.CILC | |
Retrocopy | LNKVSKIYPLPHMYVIKDL<VPDLNNFYAQYKFTEPYLKKKDESQEGKQQYLQSTEDHEKLDGLYDCILC |
Parental | ACC |
ACC | |
Retrocopy | ACC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015832 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005664 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007927 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000018475 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004817 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016629 | 1 retrocopy |
retro_mmur_1062 ,
|
Myotis lucifugus | ENSMLUG00000000032 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013264 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013780 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004803 | 2 retrocopies | |
Xenopus tropicalis | ENSXETG00000013435 | 1 retrocopy |