RetrogeneDB ID: | retro_sara_577 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_235372:50998..51474(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDHB | ||
Ensembl ID: | ENSSARG00000013780 | ||
Aliases: | None | ||
Description: | succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:HGNC Symbol;Acc:10681] |
Percent Identity: | 86.96 % |
Parental protein coverage: | 68.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLNNFYAQYKSIEPYLKKK-DESQE |
ICGSCA.N.NGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKD.VPDLNNFYAQYKSIEPYLKKK.DESQE | |
Retrocopy | ICGSCAVNTNGGNTLACTRRIDTNLNKVSKIYPLPHMYVIKDFVPDLNNFYAQYKSIEPYLKKK>DESQE |
Parental | GKKQYLQSIEDREKLDGLYECILCACC-STSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKL |
G.KQYLQS.E.REKLDGL.ECILCA.C.STSCPSYW.NG.KYLG.A.LMQA..WM.DSR.DFT.ERLAKL | |
Retrocopy | GEKQYLQSREGREKLDGLSECILCA-C>STSCPSYWGNGNKYLGLAGLMQAHGWMMDSRGDFTKERLAKL |
Parental | QDPFSLYRCHTIMNCTKTCPK |
QDPF.LYRCHTIMNCT.TCPK | |
Retrocopy | QDPFPLYRCHTIMNCTRTCPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015832 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005664 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007927 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000018475 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004817 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016629 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000032 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013264 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013780 | 1 retrocopy |
retro_sara_577 ,
|
Tupaia belangeri | ENSTBEG00000004803 | 2 retrocopies | |
Xenopus tropicalis | ENSXETG00000013435 | 1 retrocopy |