RetrogeneDB ID:

retro_mmur_1636

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_9991:16316..16633(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS24
Ensembl ID:ENSMICG00000005951
Aliases:None
Description:ribosomal protein S24 [Source:HGNC Symbol;Acc:10411]


Retrocopy-Parental alignment summary:






>retro_mmur_1636
ATGAACGACACAGTAACTATCCGGACCAGGAAGTTCATGACCAACCGACTACTTCAGAGGAAACAAATGGTCATCGATGT
CTTCATCCTGGGAAGGCAACAGTACCAAAGACAGAAATTAGGGAAAAACTAGCCAAAATGTACAAGACCACACCAGATGT
CATCTTTGTATTTGGATTCAGAACTCACTTTGGTGGTGGCAAAACAACTGGCTTTGGCATGATTTACGATTCCTTGGATT
ATGCAAAGAAAAATGAACCCAAACATAGACTCGCAAGGCATGGCCTGTATGAGAAGAAAAAGACATCAAGAAAGCAG

ORF - retro_mmur_1636 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.65 %
Parental protein coverage: 81.4 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMNDTVTIRTRKFMTNRLLQRKQMVMMV-LRPGKATSPKTEIREKLATRY-TPPDAIFVFGFRTHFGGGKT
MNDTVTIRTRKFMTNRLLQRKQMV..V.L.PGKAT.PKTEIREKLA..Y.T.PD.IFVFGFRTHFGGGKT
RetrocopyMNDTVTIRTRKFMTNRLLQRKQMVIDV<LHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKT
ParentalTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQ
TGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQ
RetrocopyTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1636 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1636 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 28 retrocopies.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG000000169395 retrocopies
Gadus morhua ENSGMOG000000125951 retrocopy
Microcebus murinus ENSMICG00000005951 7 retrocopies
Monodelphis domestica ENSMODG000000250913 retrocopies
Ornithorhynchus anatinus ENSOANG000000063291 retrocopy
Sarcophilus harrisii ENSSHAG000000080903 retrocopies
Sus scrofa ENSSSCG000000103288 retrocopies



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