RetrogeneDB ID: | retro_sscr_902 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 7:54994460..54994796(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000010328 | ||
Aliases: | LOC100155012, RPS24 | ||
Description: | 40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:F1S2E5] |
Percent Identity: | 86.61 % |
Parental protein coverage: | 68.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTT |
MNDTVT.RTRKFM.N.LLQ.K.MVI..LHPGKATVP.TEIREKLAKMYKT.PDVIFVFGFRTHFGGGKTT | |
Retrocopy | MNDTVTLRTRKFMAN*LLQQK*MVIAALHPGKATVPETEIREKLAKMYKTPPDVIFVFGFRTHFGGGKTT |
Parental | GFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKN |
GFG.I.DSLDYAKKNEPK.RLARH.LY.KKKTSRKQRKE.KN | |
Retrocopy | GFGIIFDSLDYAKKNEPKLRLARHDLYKKKKTSRKQRKECKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 307 .01 RPM |
SRP014902_testis | 0 .00 RPM | 543 .58 RPM |
SRP018288_heart | 0 .00 RPM | 921 .88 RPM |
SRP018288_kidney | 0 .20 RPM | 281 .92 RPM |
SRP018288_liver | 0 .00 RPM | 248 .50 RPM |
SRP018288_lung | 1 .22 RPM | 655 .56 RPM |
SRP018856_adipose | 0 .34 RPM | 472 .27 RPM |
SRP035408_brain | 0 .03 RPM | 1032 .12 RPM |
SRP035408_liver | 0 .00 RPM | 794 .19 RPM |