RetrogeneDB ID: | retro_sscr_289 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 11:81827715..81828106(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000016840 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000010328 | ||
Aliases: | LOC100155012, RPS24 | ||
Description: | 40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:F1S2E5] |
Percent Identity: | 81.06 % |
Parental protein coverage: | 99.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTT |
MNDT.TI..RKFMTN..L..KQMVIDVLHPGKATVPKTEIREKLAKMYKTTPD.IFVFGFRTHF.GGK.T | |
Retrocopy | MNDTATIGSRKFMTNQPLEQKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDIIFVFGFRTHFCGGKAT |
Parental | GFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG-TAKANVGAGKKK |
GFG.IYDSLDYAKKNEPKH.LARH.L.EK.KTSRKQRKE.........G.TAKANVGAGKKK | |
Retrocopy | GFGLIYDSLDYAKKNEPKHSLARHSLNEKRKTSRKQRKE-EIQDEEIQG>TAKANVGAGKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 21 .77 RPM | 307 .01 RPM |
SRP014902_testis | 4 .81 RPM | 543 .58 RPM |
SRP018288_heart | 0 .13 RPM | 921 .88 RPM |
SRP018288_kidney | 0 .49 RPM | 281 .92 RPM |
SRP018288_liver | 0 .16 RPM | 248 .50 RPM |
SRP018288_lung | 0 .10 RPM | 655 .56 RPM |
SRP018856_adipose | 0 .81 RPM | 472 .27 RPM |
SRP035408_brain | 0 .67 RPM | 1032 .12 RPM |
SRP035408_liver | 31 .59 RPM | 794 .19 RPM |