RetrogeneDB ID: | retro_oana_54 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig234532:875..1226(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS24 | ||
Ensembl ID: | ENSOANG00000006329 | ||
Aliases: | None | ||
Description: | ribosomal protein S24 [Source:HGNC Symbol;Acc:10411] |
Percent Identity: | 51.28 % |
Parental protein coverage: | 87.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTG |
DT...R..KF..N.LL.RKQ..I.VLHPG...V.K.EIRE.LAK..K...P.....FGF...FGGG..TG | |
Retrocopy | DTFSLRIKKFISNPLLNRKQFCIEVLHPGRGNVSKAEIRERLAKQFKVKEPKTVILFGFKSIFGGGISTG |
Parental | FGMIYDSLDYAKKNEPKHRLARHGLYE-KKKTSRKQRKERKNRMKKV |
FG.IYD......K.E.K.RL.R.G..E...K..R...KE.KNR.KKV | |
Retrocopy | FGLIYDTMTAVRKYERKYRLVRNGIEEATTKMGRRAKKELKNRRKKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 274 .30 RPM |
SRP007412_cerebellum | 0 .00 RPM | 240 .53 RPM |
SRP007412_heart | 0 .00 RPM | 522 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 408 .61 RPM |
SRP007412_liver | 0 .00 RPM | 250 .33 RPM |
SRP007412_testis | 0 .00 RPM | 531 .10 RPM |