RetrogeneDB ID: | retro_mmur_183 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_161:46571..46987(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMICG00000004110 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.9 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | KGGKNRRRGKNENESEKRELVFKEDGQE-YAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK-VWINTS |
KGGKNR.RGK..NES.KRELV.K.DGQ..Y...IK.LGNG.L.A...DG.KRL.HIRGKLRKK....NTS | |
Retrocopy | KGGKNRCRGKRKNESKKRELVYKGDGQQLYGHLIKTLGNG*LQAKYLDGIKRLRHIRGKLRKK>I*VNTS |
Parental | DIIL-VGLRDYQDNKADVILKYNADEAR-SLKAYGELPEHAKINETDT-FGPGDDDEIQFDDIGDDDEDI |
DII..VGL..YQDNKADVI.KY..DEA..SLKA.G.LPE.A.IN.T.T.FGPG.DDEI..DD.G.DD.D. | |
Retrocopy | DIII>VGLQHYQDNKADVIFKYDTDEAK<SLKADGKLPEYA*INKTET>FGPGEDDEIHCDDTGYDDKDL |
Parental | DD |
.D | |
Retrocopy | GD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000173674 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000015565 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004110 | 2 retrocopies |
retro_mmur_183 , retro_mmur_197,
|
Myotis lucifugus | ENSMLUG00000012977 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027820 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067194 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009913 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008182 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005736 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029864 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017492 | 6 retrocopies |