RetrogeneDB ID: | retro_nleu_1845 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397312.1:16538910..16539278(-) | ||
Located in intron of: | ENSNLEG00000014406 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198692 | ||
Ensembl ID: | ENSNLEG00000009913 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.93 % |
Parental protein coverage: | 69.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | ESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKA |
E..K.ELV.K.D.QE...VIKM.GN..LE.MCFDGVKRLCH.RGKLRKK..INTSDIILVGL.D.QDNK. | |
Retrocopy | EPQKGELVYKGDRQE*--VIKMKGNR*LESMCFDGVKRLCHMRGKLRKKRRINTSDIILVGL*D*QDNKS |
Parental | DVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIG-DDDE-DIDDV |
DVILKYNA.EARSL.AYG...E.AKIN.T...GP..DD.IQ...I...DD..D.DD. | |
Retrocopy | DVILKYNACEARSLRAYGKFLESAKINKTNILGP-RDDKIQYLTIF<QDDDKDLDDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000173674 | 2 retrocopies | |
Latimeria chalumnae | ENSLACG00000015565 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004110 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012977 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027820 | 1 retrocopy | |
Mus musculus | ENSMUSG00000067194 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009913 | 1 retrocopy |
retro_nleu_1845 ,
|
Otolemur garnettii | ENSOGAG00000008182 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005736 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029864 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017492 | 6 retrocopies |