RetrogeneDB ID:

retro_mmur_254

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_1994:212018..212330(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF1B
Ensembl ID:ENSMICG00000013223
Aliases:None
Description:eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:30792]


Retrocopy-Parental alignment summary:






>retro_mmur_254
TTCGACCCCTTTGCTGATGCAAGTAAGGGTGATAACCTGCTTCCTGCTGGCACTGAGGATTATATCCATATAAGAATTCA
ACAGAGAAACGGCAGGAAGACCCTTACTACTGTCCAAGGGATCGCTGATGATTACAATAAAAAGAAATTAGTGAAGGCGT
TTAAGAAGAAATTTGCCTGCAATGGTACTGTAATTGAGCATCCAGAATATGGAGAAGTAATTCAGCTACAGGGTGACTAG
TGCAAGAACATATGCCAGTTCCTTGTAGAGATTGGACTGGCTAAGGACGATCAGCTGAAGGTTCATGGGTTT

ORF - retro_mmur_254 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.42 %
Parental protein coverage: 92.04 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEY
FDPFADA.KGD.LLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY.KKKLVKAFKKKFACNGTVIEHPEY
RetrocopyFDPFADASKGDNLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYNKKKLVKAFKKKFACNGTVIEHPEY
ParentalGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF
GEVIQLQGD..KNICQFL.E.G..K..QLKVHGF
RetrocopyGEVIQLQGD*CKNICQFLVEIGLAKDDQLKVHGF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_254 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_254 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 29 retrocopies.

Species Parental gene accession Retrocopies number
Dipodomys ordii ENSDORG000000136894 retrocopies
Echinops telfairi ENSETEG000000172955 retrocopies
Microcebus murinus ENSMICG00000013223 5 retrocopies
Macaca mulatta ENSMMUG000000177041 retrocopy
Monodelphis domestica ENSMODG000000110562 retrocopies
Mus musculus ENSMUSG000000069411 retrocopy
Otolemur garnettii ENSOGAG000000252241 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000121681 retrocopy
Tupaia belangeri ENSTBEG000000131856 retrocopies
Tarsius syrichta ENSTSYG000000063383 retrocopies



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