RetrogeneDB ID: | retro_itri_1597 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393564.1:1641646..1641874(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1B | ||
Ensembl ID: | ENSSTOG00000012168 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:30792] |
Percent Identity: | 94.74 % |
Parental protein coverage: | 67.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQ |
..GRKTLTTVQGIADDYDKKKLVKAFKKKFACNG.VIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQ | |
Retrocopy | QDGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGSVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQ |
Parental | LKVHGF |
LKVH.F | |
Retrocopy | LKVHRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000013689 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000017295 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000013223 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000017704 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011056 | 2 retrocopies | |
Mus musculus | ENSMUSG00000006941 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025224 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002719 | 15 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012168 | 1 retrocopy |
retro_itri_1597 ,
|
Tupaia belangeri | ENSTBEG00000013185 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000006338 | 3 retrocopies |