RetrogeneDB ID: | retro_mmus_587 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:91228185..91228512(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif1b | ||
Ensembl ID: | ENSMUSG00000006941 | ||
Aliases: | Eif1b, 1500010M16Rik, 3110001N14Rik, Gc20 | ||
Description: | eukaryotic translation initiation factor 1B [Source:MGI Symbol;Acc:MGI:1916219] |
Percent Identity: | 76.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN |
M.T.QN.QSFDP.ADATKG.DLLPAGTEDYIHIRIQQR.GR.TL..VQG.AD.YDKKKLVKAF.KK.ACN | |
Retrocopy | MPTVQNFQSFDPLADATKGNDLLPAGTEDYIHIRIQQRDGRQTLIAVQGVADSYDKKKLVKAFRKKPACN |
Parental | GTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF |
G.VI.HP.Y.EV.QLQGDQRK..CQFLLE.GI.K.....VHGF | |
Retrocopy | GRVIDHPKYREVTQLQGDQRKSVCQFLLEAGITK----AVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 61 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 83 .33 RPM |
SRP007412_heart | 0 .00 RPM | 34 .52 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .02 RPM |
SRP007412_liver | 0 .00 RPM | 16 .63 RPM |
SRP007412_testis | 0 .00 RPM | 122 .76 RPM |