RetrogeneDB ID: retro_mmur_683

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4620:108882..109222(-)
• Located in intron of: ENSMICG00000004432

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000015098
• Aliases: None
• Description: None

Sequence

>retro_mmur_683
TCCAAAATTAGACACCCAGGGCCATCATTTTTCCACTTATTCTTTCAAGTCAGTGCAATTATAGTCTATTTTCTCTGTGA
ATTGCTCAGCAACAGCTTTTTTGCCTATACGGTGATAATTATCTTGTTGTCATGTGACTTTTGGGCAGTGAAGAATGTCA
CAAGTAGACTAATGGTTGACCTACATTGGTAGAATCACATTAATAAAGATGGAAAGAGCCACTGGGTATTTCAGTCCAGA
AAAGCATCCCTTTAAGAGAATAAAACTGTTTCAGAGACTGAATCAAGAATCTTTTGGTTAGGACTTACTGCCTGCCCAGT
TGCTATGGGTGATATTTGCC

Alignment

ORF - retro_mmur_683 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.87 %
• Parental protein coverage: 74.03 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SKIRHPVASFFHLFFRVSAIIVYLLCELLSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDE
          SKIRHP..SFFHLFF.VSAIIVY.LCELLS.SF.A..V.II.LLSCDFWAVKNVT.RLMV.L.W.NHI..
Retrocopy SKIRHPGPSFFHLFFQVSAIIVYFLCELLSNSFFAYTV-IIILLSCDFWAVKNVTSRLMVDLHW*NHINK

Parental  DGKSHWVFESRKASPQENKTVSEAESRIFWLGLIACPV-LWVIFA
          DGKSHWVF.SRKAS..ENKTVSE.ESRIFWLGL.ACPV.LWVIFA
Retrocopy DGKSHWVFQSRKASL*ENKTVSETESRIFWLGLTACPV>LWVIFA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_683 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_683 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000007609	2 retrocopies	retro_dnov_1041, retro_dnov_1390,
Homo sapiens	ENSG00000171928	1 retrocopy	retro_hsap_2278,
Homo sapiens	ENSG00000175106	1 retrocopy	retro_hsap_1625,
Loxodonta africana	ENSLAFG00000003854	1 retrocopy	retro_lafr_465,
Microcebus murinus	ENSMICG00000015098	4 retrocopies	retro_mmur_1331, retro_mmur_151, retro_mmur_161, retro_mmur_683 ,
Myotis lucifugus	ENSMLUG00000002825	1 retrocopy	retro_mluc_1484,
Macaca mulatta	ENSMMUG00000019203	5 retrocopies	retro_mmul_1032, retro_mmul_2125, retro_mmul_278, retro_mmul_600, retro_mmul_748,
Nomascus leucogenys	ENSNLEG00000014658	2 retrocopies	retro_nleu_1961, retro_nleu_2008,
Pan troglodytes	ENSPTRG00000007790	1 retrocopy	retro_ptro_20,
Pan troglodytes	ENSPTRG00000008796	1 retrocopy	retro_ptro_996,
Rattus norvegicus	ENSRNOG00000050649	1 retrocopy	retro_rnor_636,