Parental gene:

FAM18B1, ENSPTRG00000007790

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:37077771..37104475(-)


>ENSPTRG00000007790
ATGTTGCAGCAGGATAGTAATGATGACACTGAAGATGTTTCACTGTTTGATGCGGAAGAGGAGACGACTAATAGACCAAG
AAAAGCCAAAATCAGACATCCAGTAGCATCGTTTTTCCACTTATTCTTTCGAGTCAGTGCAATCATCGTCTATCTTCTCT
GTGAGTTGCTCAGCAGCAGCTTTATTACCTGTATGGTGACAATTATCTTGTTGTTGTCGTGTGACTTTTGGGCAGTGAAG
AATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGATGGAAAGAGCCATTGGGTGTTTGA
ATCTAGAAAGGAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCT
GTCCAGTACTATGGGTGATATTTGCCTTTAGTGCACTCTTCTCCTTCAGAGTAAAGTGGTTGGCGGTGGTTCTTATGGGT
GTGGTGCTACAAGGTGCCAACCTGTATGGTTACATCAGGTGTAAGGTGGGCAGCAGAAAGAATTTAACCAGCATGGCTAC
TTCATATTTTGGAAAGCAGTTTTTAAGACAAAACACTGGAGATGATCAGACTTCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2 .63 RPM
SRP007412_cerebellum 2 .72 RPM
SRP007412_heart 2 .86 RPM
SRP007412_kidney 4 .58 RPM
SRP007412_liver 4 .68 RPM
SRP007412_testis 8 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000005330 ortholog_one2many 1 retrogene
retro_cpor_184,
Dasypus novemcinctus ENSDNOG00000007609 ortholog_one2many 2 retrogenes
retro_dnov_1041, retro_dnov_1390,
Homo sapiens ENSG00000171928 ortholog_one2many 1 retrogene
retro_hsap_2278,
Homo sapiens ENSG00000175106 possible_ortholog 1 retrogene
retro_hsap_1625,
Loxodonta africana ENSLAFG00000003854 ortholog_one2many 1 retrogene
retro_lafr_465,
Microcebus murinus ENSMICG00000015098 possible_ortholog 4 retrogenes
retro_mmur_1331, retro_mmur_151, retro_mmur_161, retro_mmur_683,
Myotis lucifugus ENSMLUG00000002825 ortholog_one2many 1 retrogene
retro_mluc_1484,
Oryctolagus cuniculus ENSOCUG00000000498 ortholog_one2many 1 retrogene
retro_ocun_759,
Otolemur garnettii ENSOGAG00000012225 ortholog_one2many 1 retrogene
retro_ogar_978,
Pan troglodytes ENSPTRG00000008796 within_species_paralog 1 retrogene
retro_ptro_996,
Rattus norvegicus ENSRNOG00000050649 ortholog_one2many 1 retrogene
retro_rnor_636,
Ictidomys tridecemlineatus ENSSTOG00000000642 ortholog_one2many 6 retrogenes
retro_itri_1415, retro_itri_1841, retro_itri_310, retro_itri_473, retro_itri_711, retro_itri_782,
Tarsius syrichta ENSTSYG00000008082 ortholog_one2many 2 retrogenes
retro_tsyr_2000, retro_tsyr_530,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_20 98.54 100.00
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Download FASTA sequences of all ENSPTRG00000007790 retrocopies