RetrogeneDB ID: | retro_dnov_1390 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_19336:11891..12350(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000007609 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MLPQDSNDDIEDVSLFDAEEETANRPR-KSKIRHPVASFFHLFFRVSAIVVYLLCELFSNSFIACMVTII |
MLPQDSNDD.EDVSLFDAEEET..RP..KSK.R.P...FFHLFF.VSAIVVYLLCELF..SFIA.MVTII | |
Retrocopy | MLPQDSNDDTEDVSLFDAEEETRKRPK<KSKTRYPGVTFFHLFFQVSAIVVYLLCELFRSSFIAYMVTII |
Parental | LLLSCDFWAVKNITGRLMVGLRWWNHIDEDGKSHWVFES-RKXXXXXXXTVSEAESRIFWLGLITCPVLW |
LLLS.D...VKN.TG.LMVGL.WWN...EDGKSHWVFES..........TV.EAESRI..LGLITCPVLW | |
Retrocopy | LLLSSDLGSVKNVTGTLMVGLHWWNRFNEDGKSHWVFES<QEGSSQENKTVPEAESRIL*LGLITCPVLW |
Parental | -VIF-FSALFSFRVKWL |
.VIF.FSALFSFRVK.L | |
Retrocopy | <VIFAFSALFSFRVKCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 13 .03 RPM |
SRP012922_cerebellum | 0 .00 RPM | 5 .64 RPM |
SRP012922_heart | 0 .00 RPM | 4 .87 RPM |
SRP012922_kidney | 0 .00 RPM | 7 .12 RPM |
SRP012922_liver | 0 .00 RPM | 5 .11 RPM |
SRP012922_lung | 0 .00 RPM | 13 .59 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 6 .23 RPM |
SRP012922_spleen | 0 .00 RPM | 8 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005330 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007609 | 2 retrocopies |
retro_dnov_1041, retro_dnov_1390 ,
|
Homo sapiens | ENSG00000171928 | 1 retrocopy | |
Homo sapiens | ENSG00000175106 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003854 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015098 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000002825 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019203 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014658 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000498 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012225 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007790 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008796 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050649 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000642 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000008082 | 2 retrocopies |