RetrogeneDB ID: retro_mmur_894

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_12193:3217..3630(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UTP11L
• Ensembl ID: ENSMICG00000001496
• Aliases: None
• Description: UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) [Source:HGNC Symbol;Acc:24329]

Sequence

>retro_mmur_894
AAAATCGAAAGACTAAAATCAGAGCTCCATCTGCTGGACTTCTAGGGGAAGCAACAAAAGAAGCATGTGTTCTTTTTTCA
CACCAAAAAGGAAGTTGAACAGTTTGATACTGCAACACACCTGCATACAGCACTGGAACTATTCAACAGAGTCTTCAATA
GACCCAGGATAGAGCCATTGCAGAAGGAAAGAGTGAAAGGAGTTACCCATCAGACTCGACTTAAGCGGATAGCTAAAAAA
GGCAAAAGCAATATAATTGTCTGACACAGCGGATTGAGTGAGAAAAGAAATTGTTCATTATTGCACAGAAAATTCAAACA
CGAAAAGATCTTCTGGATAAAGCTCAGAAGGTGAAGGTGAAGAAACAAACAGTGAACTCCCCAGGTATTTACAAATTTCA
GAGTCATCGAAAA

Alignment

ORF - retro_mmur_894 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.21 %
• Parental protein coverage: 54.55 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KIERLKSELHLLDFQGKQQKKHVFFFDTKKEVEQFDIATHLHTAPELVDRVFNRPRIETLQKERVKGVNH
          KIERLKSELHLLDF.GKQQKKHVFFF.TKKEVEQFD.ATHLHTA.EL..RVFNRPRIE.LQKERVKGV.H
Retrocopy KIERLKSELHLLDF*GKQQKKHVFFFHTKKEVEQFDTATHLHTALELFNRVFNRPRIEPLQKERVKGVTH

Parental  QTRLKRIAK-ERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLLDKAQKVKVKKETVNSPAIYKFQSRRK
          QTRLKRIAK..RQKQYNCLTQRIE.EKKLF.IAQKIQTRKDLLDKAQKVKVKK.TVNSP.IYKFQS.RK
Retrocopy QTRLKRIAK<KRQKQYNCLTQRIE*EKKLFIIAQKIQTRKDLLDKAQKVKVKKQTVNSPGIYKFQSHRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_894 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_894 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001043	1 retrocopy	retro_cpor_1084,
Microcebus murinus	ENSMICG00000001496	1 retrocopy	retro_mmur_894 ,
Myotis lucifugus	ENSMLUG00000001003	1 retrocopy	retro_mluc_2386,
Mus musculus	ENSMUSG00000028907	1 retrocopy	retro_mmus_1968,
Oryctolagus cuniculus	ENSOCUG00000007154	2 retrocopies	retro_ocun_1285, retro_ocun_669,
Otolemur garnettii	ENSOGAG00000016492	2 retrocopies	retro_ogar_3229, retro_ogar_3324,
Rattus norvegicus	ENSRNOG00000007174	1 retrocopy	retro_rnor_1838,