RetrogeneDB ID:

retro_ogar_3229

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873749.1:2027636..2028395(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UTP11L
Ensembl ID:ENSOGAG00000016492
Aliases:None
Description:UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) [Source:HGNC Symbol;Acc:24329]


Retrocopy-Parental alignment summary:






>retro_ogar_3229
ATGGCTGCAGCTTTTCAGAAGGCGGCTAAGTCTCGACAGCGGGAACATCGAGAGTGAAGTCAGCCTGGCTTTCGAAAACA
TCTGGGCCTGCTGGAGAAAAAGAAAGATTACAAACTTCGCACAGATGACTACCATAAAAAACAAGAATACCTCAGAGCTC
TCCAGAAGAAGGTGCTTGAAAAAAATCCAGATGAATTCTACTATAAAATGACTCGAGTTAAACTCCAGGATGGAGTTCAT
GTTATTAAGGAAACTAAGGAAGAAGTAACTCCAGAACAGCTAAAGCTGATGAGAACTCAGGATGTCAAATATATAGAAAT
GAAAAGAGTTGCAGAAGCTAAGAAAATTGAAAGACTAAAATCAGAGCTCCATCTGCTGGATTTCTAGGGGAAGCAAAAGA
ATAAGCATGTGTTCTTTTTCGACACCAAAAAGGAAGTTGAACAGTTTGATATTGCAACTCACCTGCGTACGGCTCCGGAA
CTAGTGGACAGAGTCTTTAATAGACCCAGGATAGAGACGTTGCAGAAGGAAAAAGTGAAAGGAGTCACTCATCCGTCTCG
ACTTAAGCAGATAGCTAAAGAAAGGGAAAAGCAATATAACTGCCTGACACAGCGGATTGACCGAGAGAAGAAATTGTTCG
TTATTGCACAGAAAATTCAAACACGCAAAGATCTCCTGGATAAAACTCAGAAGGTGAAGGTGAAGAAAGAAACAGTGAAC
TCCCCAGCTATTTACAAATTTCAGAGTCATCGCAAACGT

ORF - retro_ogar_3229 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.05 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYHKKQEYLRALRKKALEKNPDEFYYKM
MAAAF.KAAKSRQREHRE.SQPGFRKHLGLLEKKKDYKLR.DDYHKKQEYLRAL.KK.LEKNPDEFYYKM
RetrocopyMAAAFQKAAKSRQREHRE*SQPGFRKHLGLLEKKKDYKLRTDDYHKKQEYLRALQKKVLEKNPDEFYYKM
ParentalTRVKLQDGVHVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQNKHVFFF
TRVKLQDGVHVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDF.GKQ.NKHVFFF
RetrocopyTRVKLQDGVHVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDF*GKQKNKHVFFF
ParentalDTKKEVEQFDIATHLRTAPELVDRVFNRPRIETLQKEKVKGVTHPSRLKRIAKEREKQYNCLTQRIEREK
DTKKEVEQFDIATHLRTAPELVDRVFNRPRIETLQKEKVKGVTHPSRLK.IAKEREKQYNCLTQRI.REK
RetrocopyDTKKEVEQFDIATHLRTAPELVDRVFNRPRIETLQKEKVKGVTHPSRLKQIAKEREKQYNCLTQRIDREK
ParentalKLFVIAQKIQTRKDLLDKTQKVKVKKETVNSPAIYKFQSRRKR
KLFVIAQKIQTRKDLLDKTQKVKVKKETVNSPAIYKFQS.RKR
RetrocopyKLFVIAQKIQTRKDLLDKTQKVKVKKETVNSPAIYKFQSHRKR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3229 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Cavia porcellus ENSCPOG000000010431 retrocopy
Microcebus murinus ENSMICG000000014961 retrocopy
Myotis lucifugus ENSMLUG000000010031 retrocopy
Mus musculus ENSMUSG000000289071 retrocopy
Oryctolagus cuniculus ENSOCUG000000071542 retrocopies
Otolemur garnettii ENSOGAG00000016492 2 retrocopies
retro_ogar_3229 , retro_ogar_3324,
Rattus norvegicus ENSRNOG000000071741 retrocopy



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