>retro_mmus_1109
ATCGACCCCACTGGCAGTTACCATGGCGACAGTGACTTGCAGCTGGAGAGAATCAATGTGTACTACAATGAAGCTGCTGG
CAACAAATATGTACCTTGGGCCATCCTAGTGGACCTGGAGCCTGGCACCATGGACTCCGTGAGGTCGGGACCATTCGGCC
AGATCTTCAGGTCAGACAACTTTGTGCTCGGCCAGAGTGATGCAGGAAATAACTGGGCAAAGGGCCACTACAGAAAGGGG
GCCGAGCTAGTGGACTCTGTCCTGGACGTGGTGAGGAAGGAATCAGAAAGCTGTGACTGTCTCCAGGGCTTCCAGCTGAC
CCACTTACTGGGGGGAGGCACTGGCTCAGGCATGGGGACCCTGCTCATCAGCAAGATCAGAGAGGAGTACCCAGACCGCA
TCATGAAGACCTTCAGCGTCATGCCCTCACCCAAGGTCTCTGACACTGTGGTGGAGCCCTATAATGTCACCCTCTGAGTG
CACCAGCTGGTAGAGAACACAGATGAAACCTAGTCTATCGACAATTAGGCTCTGTAGGACATCTGCTTCCGCACCCTGAA
GCTGACCACACCCACCTATGGCGATCTCAACCACCTGGTGTCAGCCACCATGAGTGAAGTGACCACCTGCCTGCGCTTCC
CAGGCCAGCTGAACGCAGACCTGCACAAGCTGGCTGTGAACATGGTGCCATTCCCACGCCTGCACTTCTTCATGCCAGGC
TTTGCACCTCTGACCAGCCAGGGCAGCCAACAGTACCGAGCCCTGACAGTGCCCGAGCTGACCCAGCCTATGTTCAACTC
CAAGAACATGATGGCTGTCTGCGACCCTCGCCATGGCCGCTACCTGACCATGGCCATTTTCCGTGGCCGCATGTCCATGA
AGGAGGTGGATGAGCAGATGCTCAACGTGCAGAACAAGAACGAACAGCAGCTACTTCGTGGAGTGGATCCCCAACAATGT
CAAGACGGCCGTGTGTGACATCCCTCCTCGTGGCCTCAAGATGTCAGCCACCTTCATTGGCAATAGCATTGCTATCCAGG
AGCTGTTCAAGCGCATCTCTGAGCAGTTCACTGCCATGTTCCAGCGCAAGGCTTTCCTGCACTGATACACGGGCGAGGGC
ATGGACGAGATGGAGTTCACCGAGGCGGAGAGCAACATGAACGACCTGGTA
ORF - retro_mmus_1109 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.26 % |
Parental protein coverage: |
86.47 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | IDCAGSYCGTSALQLERISVYYNEAYGKKYVPRAVLVDLEPGTMDSIRSSRLGVLFQPDSFVHGNSGAGN |
| ID..GSY.G.S.LQLERI.VYYNEA.G.KYVP.A.LVDLEPGTMDS.RS...G..F..D.FV.G.S.AGN |
Retrocopy | IDPTGSYHGDSDLQLERINVYYNEAAGNKYVPWAILVDLEPGTMDSVRSGPFGQIFRSDNFVLGQSDAGN |
|
Parental | NWAKGHYTEGAELIENVMDVVRRESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRILNSFSV |
| NWAKGHY..GAEL...V.DVVR.ESESCDCLQGFQ..H.LGGGTGSGMGTLL..KIREEYPDRI...FSV |
Retrocopy | NWAKGHYRKGAELVDSVLDVVRKESESCDCLQGFQLTHLLGGGTGSGMGTLLISKIREEYPDRIMKTFSV |
|
Parental | MPSPKVSDTVVEPYNAVLSIHQLIENTDACFCIDNEALYDICFRTLRLTTPTYGDLNHLVSLTMSGITTS |
| MPSPKVSDTVVEPYN..L..HQL.ENTD....IDN.AL.DICFRTL.LTTPTYGDLNHLVS.TMS..TT. |
Retrocopy | MPSPKVSDTVVEPYNVTL*VHQLVENTDET*SIDN*AL*DICFRTLKLTTPTYGDLNHLVSATMSEVTTC |
|
Parental | LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQYRALSVAELTQQMFDARNIMAACDPRRGR |
| LRFPGQLNADL.KLAVNMVPFPRLHFFMPGFAPLT.QGSQQYRAL.V.ELTQ.MF...N.MA.CDPR.GR |
Retrocopy | LRFPGQLNADLHKLAVNMVPFPRLHFFMPGFAPLTSQGSQQYRALTVPELTQPMFNSKNMMAVCDPRHGR |
|
Parental | YLTVACIFRGKMSTKEVDQQLLSIQ-TR-NSNCFVEWIPNNVKVAVCDIPPRGLNMAATFLGNNTAIQEL |
| YLT.A.IFRG.MS.KEVD.Q.L..Q.TR.NS..FVEWIPNNVK.AVCDIPPRGL.M.ATF.GN..AIQEL |
Retrocopy | YLTMA-IFRGRMSMKEVDEQMLNVQ>TRTNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSIAIQEL |
|
Parental | FTRVSEHFSAMFRRRAFVHWYTSEGMDISEFGEAESDIHDLV |
| F.R.SE.F.AMF.R.AF.H.YT.EGMD..EF.EAES...DLV |
Retrocopy | FKRISEQFTAMFQRKAFLH*YTGEGMDEMEFTEAESNMNDLV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .14 RPM |
0 .00 RPM |
SRP007412_cerebellum |
0 .04 RPM |
0 .09 RPM |
SRP007412_heart |
0 .03 RPM |
6 .10 RPM |
SRP007412_kidney |
0 .04 RPM |
0 .33 RPM |
SRP007412_liver |
0 .03 RPM |
0 .38 RPM |
SRP007412_testis |
0 .00 RPM |
0 .00 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_1109 was not detected
No EST(s) were mapped for retro_mmus_1109 retrocopy.
No TSS is located nearby retro_mmus_1109 retrocopy 5' end.
retro_mmus_1109 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_1109 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
8 parental genes, and
9 retrocopies.