>retro_mmus_1358
AGTAAAATGGCGTCCTCAGAGTTAAGCTCGGGGCCTGTGGAGAAAGCTGCCAAGCCATTGCCATTTAAGGATCCCAACTT
TGTGCACTCCCATCATGGCGGTGCAGTAACTGGCAAGAAGAATAGAACTTGGAAGAACCTCAAACAGATCCTCGCTGCTG
AAAGTCCATTGCCATGACAACTAAAGGATCCTAACTACTTTATTGTTGGTGCTCCTTCGTCCTTTAAGCCAGGTAAGAAG
TATTCTGATGTTTCAGGCCTTCTTGCCAACTATACAGAGCCTCAGAGCAAGCTGCAGTTCAGCACTATTGAGGAATTCTC
CTACATTTGAAGGCTG
ORF - retro_mmus_1358 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.71 % |
Parental protein coverage: |
83.58 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SKMASSELSSGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILAAERALPWQLNDPNYFSID |
| SKMASSELSSGPVEKAAKPLPFKDPNFVHS.HGGAV.GKKNRTWKNLKQILAAE..LP.QL.DPNYF... |
Retrocopy | SKMASSELSSGPVEKAAKPLPFKDPNFVHSHHGGAVTGKKNRTWKNLKQILAAESPLP*QLKDPNYFIVG |
|
Parental | APPSFKPAKKYSDISGLLANYTDPQSKLRFSTVEEFSYIRRL |
| AP.SFKP.KKYSD.SGLLANYT.PQSKL.FST.EEFSYI.RL |
Retrocopy | APSSFKPGKKYSDVSGLLANYTEPQSKLQFSTIEEFSYI*RL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
17 .38 RPM |
SRP007412_cerebellum |
0 .00 RPM |
14 .89 RPM |
SRP007412_heart |
0 .03 RPM |
18 .30 RPM |
SRP007412_kidney |
0 .00 RPM |
24 .49 RPM |
SRP007412_liver |
0 .00 RPM |
9 .83 RPM |
SRP007412_testis |
0 .00 RPM |
53 .15 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_1358 was not detected
No EST(s) were mapped for retro_mmus_1358 retrocopy.
No TSS is located nearby retro_mmus_1358 retrocopy 5' end.
retro_mmus_1358 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_1358 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
6 retrocopies.