RetrogeneDB ID: | retro_mmus_176 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:136733610..136734477(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000031422 | |
Aliases: | Morf4l2, 2410017O14Rik, Mrgx, Sid393p, mKIAA0026 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Morf4l1 | ||
Ensembl ID: | ENSMUSG00000062270 | ||
Aliases: | Morf4l1, MORFRG15, MRG15, TEG-189, Tex189, mKIAA4002 | ||
Description: | mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551] |
Percent Identity: | 86.51 % |
Parental protein coverage: | 59.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQ |
KT.KNKQK.PGNGDGGSTSE.PQPPRKKRAR.DPTVE.EE.F..R.EVKVKIPEELKPWLV.DWDL.TRQ | |
Retrocopy | KTRKNKQKAPGNGDGGSTSEVPQPPRKKRARADPTVESEEAFKSRMEVKVKIPEELKPWLVEDWDLVTRQ |
Parental | KQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILAD |
KQLF.LPAKKNVD.ILE.YAN.KKS.GN.DNKEYAVNEVV.GIKEYFNVMLGTQLLYKFERPQYAEIL.. | |
Retrocopy | KQLFQLPAKKNVDAILEEYANCKKSQGNVDNKEYAVNEVVGGIKEYFNVMLGTQLLYKFERPQYAEILLA |
Parental | HPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVAPPEY |
HPDAPMSQ.YGAPHLLRLFVRIGAMLAYTPLDEKSLALLL.YLHDFLKYLAKNSA.LF.ASDY.VA...Y | |
Retrocopy | HPDAPMSQIYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLGYLHDFLKYLAKNSASLFTASDYKVASADY |
Parental | HRKAV |
HRKA. | |
Retrocopy | HRKAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 65 .07 RPM | 63 .48 RPM |
SRP007412_cerebellum | 56 .36 RPM | 59 .70 RPM |
SRP007412_heart | 19 .77 RPM | 56 .63 RPM |
SRP007412_kidney | 30 .13 RPM | 53 .38 RPM |
SRP007412_liver | 30 .67 RPM | 54 .75 RPM |
SRP007412_testis | 11 .98 RPM | 301 .19 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001YIJ | POLR2A | X:136734559..136735703 |
ENCFF001YKA | POLR2A | X:136733622..136743187 |