RetrogeneDB ID: | retro_rnor_980 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:98025027..98025799(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000021960 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Morf4l1 | ||
Ensembl ID: | ENSRNOG00000014410 | ||
Aliases: | None | ||
Description: | Mortality factor 4-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6AYU1] |
Percent Identity: | 99.22 % |
Parental protein coverage: | 79.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAPKQDPKPKFQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDANL |
MAPKQDPKPKFQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDANL | |
Retrocopy | MAPKQDPKPKFQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDANL |
Parental | QKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARV |
QKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTK.NKQKTPGNGDGGSTSETPQPPRKKRARV | |
Retrocopy | QKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKTNKQKTPGNGDGGSTSETPQPPRKKRARV |
Parental | DPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQL-FYLPAKKNVDSILEDYANYKKSRGNTDN |
DPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQL.FYLPAKKNVDSILEDYANYKKSRGNTDN | |
Retrocopy | DPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQL>FYLPAKKNVDSILEDYANYKKSRGNTDN |
Parental | KEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQV |
KEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQV | |
Retrocopy | KEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .59 RPM | 131 .93 RPM |
SRP017611_kidney | 1 .40 RPM | 97 .56 RPM |
SRP017611_liver | 0 .67 RPM | 52 .18 RPM |