RetrogeneDB ID: | retro_mmus_2500 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:110512806..110513367(-) | ||
Located in intron of: | ENSMUSG00000061298 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082348 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Morf4l1 | ||
Ensembl ID: | ENSMUSG00000062270 | ||
Aliases: | Morf4l1, MORFRG15, MRG15, TEG-189, Tex189, mKIAA4002 | ||
Description: | mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551] |
Percent Identity: | 91.1 % |
Parental protein coverage: | 51.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GDGGSTSETPQPPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFY-LPAKKN |
GDGGSTSETPQPPRKKRARVDPTVENE.TFMNRVEVKV.IPEELKPWLVDDWD.ITRQKQLF..LPAKKN | |
Retrocopy | GDGGSTSETPQPPRKKRARVDPTVENE-TFMNRVEVKVMIPEELKPWLVDDWDFITRQKQLFLNLPAKKN |
Parental | VDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEY-FNVMLGTQLLYKFERPQYAEILADHPDAPMSQVY |
VDSILEDYANYKKS.GNTDNKEYAV.EVVA..KEY.FNVMLGTQLLYKFERPQYAEIL.DHPDAPMSQV. | |
Retrocopy | VDSILEDYANYKKSSGNTDNKEYAVHEVVARMKEY<FNVMLGTQLLYKFERPQYAEILTDHPDAPMSQVF |
Parental | GAPHLLRLFVRIGAMLAYTPLDEKSLA-LLLNYLHDFLKYLAKNSATLFSA |
G.PHLLRLFVRIGAMLAYTPLDEKSL..LL.NYLHDFL.YLAKNSATLFSA | |
Retrocopy | GVPHLLRLFVRIGAMLAYTPLDEKSLT>LL-NYLHDFLNYLAKNSATLFSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 63 .48 RPM |
SRP007412_cerebellum | 0 .04 RPM | 59 .70 RPM |
SRP007412_heart | 0 .06 RPM | 56 .63 RPM |
SRP007412_kidney | 0 .06 RPM | 53 .38 RPM |
SRP007412_liver | 0 .00 RPM | 54 .75 RPM |
SRP007412_testis | 0 .32 RPM | 301 .19 RPM |