>retro_mmus_2192
ATGTTCCCCTTCTCTGGCTGCTGGAGGACTGAACTGTTATTGTTGCTACTCCTGGCTGTGGCTGTGAGAGAATCCTGGCA
GACAGAAGAAAAATCGTGTGACCTGGTAGGAGAGAAGGATAAGGAGTCAAAGAACAAGGTGGCTCTCCTGGAGAGGTTCC
GGCCACTGTTTAACAAAAGTTTTGAGAGTACTGTGGGCCAGGGCTCAGACACATACAGCTACATATTCAGAGTATGCCGG
GAAGCTAGCAACCACTCCTCTGGAGCAGGCCTGGTCCAGATCAACAAAAGCAATGACAAGGAGACAGTGGTTGGGAGAAC
CAACGAGACTCACATCTTGAATGGAAGTAATTGGATCATGCTGATAGATAAAGGGGGTGATGAATATGACAACCACTGTG
GCAAAGAGCAGCGCGTGCAGTGGTGATGATCTGCAATCGGCACACACTAGCGGCTAATTTTAACCCAGTGTCTGAGGAAC
GAGGCAAAGTCCAGGATTGCTTCTACCTCTTTGAGATGGATAGCAGTCTGGCCTGTTCACCAGAGGTCTCACACCTCAGT
GTGGGCTCGATCTTACTTGTCATATTTGCATCGTTGGTTGCTGTCTATATCATTGGGGGTTTCTTATACTAGCGATTGGT
AGTGGGGGCCAAGGGAATGGAGCAGTTTCCTCATCTGGCCTTCTGGCAGGATCTTGGCAACCTAGTAGCTGATGGTTGTG
ACTTTGTGTGCCGTTCCAAACCCCGCAATGTGCCTGCAGCATATCGTGGAGTGGGGGATGACCAGCTGGGGGAAGAGTAG
GAAGAAAGGGATGATCATCTGCTACCAATG
ORF - retro_mmus_2192 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.42 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MFPFSGCWRTELLLLLLLAVAVRESWQIEEKSCDLVGEKDKESKNEVALLERLRPLFNKSFESTVGQGSD |
| MFPFSGCWRTELLLLLLLAVAVRESWQ.EEKSCDLVGEKDKESKN.VALLER.RPLFNKSFESTVGQGSD |
Retrocopy | MFPFSGCWRTELLLLLLLAVAVRESWQTEEKSCDLVGEKDKESKNKVALLERFRPLFNKSFESTVGQGSD |
|
Parental | TYSYIFRVCREASNHSSGAGLVQINKSNDKETVVGRINETHIFNGSNWIMLIYKGGDEYDNHCGKEQR-R |
| TYSYIFRVCREASNHSSGAGLVQINKSNDKETVVGR.NETHI.NGSNWIMLI.KGGDEYDNHCGKEQR.R |
Retrocopy | TYSYIFRVCREASNHSSGAGLVQINKSNDKETVVGRTNETHILNGSNWIMLIDKGGDEYDNHCGKEQR<R |
|
Parental | AVVMISCNRHTLAANFNPVSEERGKVQDCFYLFEMDSSLACSPEVSHLSVGSILLVIFASLVAVYIIGGF |
| AVVMI.CNRHTLAANFNPVSEERGKVQDCFYLFEMDSSLACSPEVSHLSVGSILLVIFASLVAVYIIGGF |
Retrocopy | AVVMI-CNRHTLAANFNPVSEERGKVQDCFYLFEMDSSLACSPEVSHLSVGSILLVIFASLVAVYIIGGF |
|
Parental | LYQRLVVGAKGMEQFPHLAFWQDLGNLVADGCDFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM |
| LY.RLVVGAKGMEQFPHLAFWQDLGNLVADGCDFVCRSKPRNVPAAYRGVGDDQLGEE.EERDDHLLPM |
Retrocopy | LY*RLVVGAKGMEQFPHLAFWQDLGNLVADGCDFVCRSKPRNVPAAYRGVGDDQLGEE*EERDDHLLPM |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .14 RPM |
67 .10 RPM |
SRP007412_cerebellum |
0 .35 RPM |
77 .98 RPM |
SRP007412_heart |
0 .09 RPM |
42 .87 RPM |
SRP007412_kidney |
0 .50 RPM |
148 .95 RPM |
SRP007412_liver |
0 .30 RPM |
90 .17 RPM |
SRP007412_testis |
0 .14 RPM |
30 .92 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_2192 was not detected
No EST(s) were mapped for retro_mmus_2192 retrocopy.
No TSS is located nearby retro_mmus_2192 retrocopy 5' end.
retro_mmus_2192 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_2192 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.