RetrogeneDB ID: | retro_tsyr_1665 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_534539:117..459(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | M6PR | ||
Ensembl ID: | ENSTSYG00000005689 | ||
Aliases: | None | ||
Description: | mannose-6-phosphate receptor (cation dependent) [Source:HGNC Symbol;Acc:6752] |
Percent Identity: | 92.98 % |
Parental protein coverage: | 52.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | TLAGNFNPVSEERGKVQDCFYLFEMDSSLACSPEISHLSVGSILLVTFASLVAVYVIGGFLYQRLVVGAK |
...GNFNPVSEERGKVQDCFYLFEMDSSL.CSPEISHLSVGSILLVTFASLVAVYVIGGFLYQRLVVGAK | |
Retrocopy | SMEGNFNPVSEERGKVQDCFYLFEMDSSLGCSPEISHLSVGSILLVTFASLVAVYVIGGFLYQRLVVGAK |
Parental | GMEQFPHLAFWQDLGNLVADGCDFVCRSKPRNVPAAYRGVGDDQ |
GMEQFPHLAF..DLGNLVADGCDFVCRSKP.NVPAAYRGVG.DQ | |
Retrocopy | GMEQFPHLAFR*DLGNLVADGCDFVCRSKP*NVPAAYRGVGGDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003538 | 1 retrocopy | |
Mus musculus | ENSMUSG00000007458 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005610 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005689 | 2 retrocopies |
retro_tsyr_1665 , retro_tsyr_882,
|