RetrogeneDB ID: | retro_tsyr_882 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_229388:3349..3800(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | M6PR | ||
Ensembl ID: | ENSTSYG00000005689 | ||
Aliases: | None | ||
Description: | mannose-6-phosphate receptor (cation dependent) [Source:HGNC Symbol;Acc:6752] |
Percent Identity: | 61.69 % |
Parental protein coverage: | 69.72 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | FESTVGQGSDTYIYIFRVCREAGNQTSGAGLVQINKSNWKETVVGRLNETHVF-NGSNWIMLIYKGGDEY |
F.STV.QGS.TYIY.FR.C.......SG..L..IN....K.TV...LN.TH.F.NGS..IMLIYK.G.EY | |
Retrocopy | FDSTVIQGSYTYIYMFRECQKSTIHISGERLMHINLR--KKTVGA*LNQTHIF>NGSSCIMLIYKEG-EY |
Parental | DSHCGKEQR-RAVVMISCNRHTLAGNFNPVSEERGKVQDCFYLFEMDSSLACSPEISHLSVGSILLVTFA |
D.HC.KEQ...AVVMI.....TL..NF.PVSE...KVQDCFYLFEMDSSL..S.E.SHLSVGSILLVT.A | |
Retrocopy | DNHCSKEQHCHAVVMILYY*QTLVDNFIPVSEV*DKVQDCFYLFEMDSSLV*SLELSHLSVGSILLVTIA |
Parental | SLVAVYVIGGFLYQ |
SLVA..V....L.Q | |
Retrocopy | SLVAICVVRELL*Q |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003538 | 1 retrocopy | |
Mus musculus | ENSMUSG00000007458 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017823 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005610 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005689 | 2 retrocopies |
retro_tsyr_1665, retro_tsyr_882 ,
|