>retro_mmus_2640
ATGGCAGAGAATGGAAAAAATTGTGACCAGAGACATGAAGCAATGAATAAGGAACAGCATAATGGCAGTTTCACAGACCA
CTCTTCAGTACATGAGAAGAAGAGAAGGGATCGGAAAGAAAGACAGAATATTGTCCTGTGGAGACAGCCGCTCATTACCT
TGCAGTATTTCTCTCTGGAAACTCTTGTAGTTTTGAAGGAATGGATCTCAAAATTGTGGCATCGTCAGAGCATTGCGGTG
TCCTTTTTACTGCTGCTTGCTGTGCTTGTAGCTATGTATTATGTGGAAGGAGCACACCAACAGCATGTGCAGTGGATAGA
GAAGCCGTTTCTTTTGTATGCCTACTGAATAGGCCTGGGGAGTTTGTCTTTTGTTGGTCTTGGAACAGGACTGCACACCT
CTCTGCTTTATCTGGGCCCACATATAGCTTCAGTTCCATTTGCTGCTTATGAATGCAATTTAGTTAATTTTCCTGAGCCA
CCCTATCCTGATCAGATTATTTGCCCAGATGAAGAAGGCACTGAAGGAGCCATTTCTCTGTGGAATATCATCTCAAAAGT
TAGAATTGAAGCCTGCATGTGGGGCACTGGGACAGCCATTGGAGAATTGCCTCTCTATTTCATGGCCAGGGCAGCTTGCC
TCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAAATGCTGGAACATGCAGAGGCTGCACAACACTGT
GCATAACAGACTAAACTGCCAGTTCAAAAACTAGTACAGAAAGTTTGATTTTTCGGGATTTTGGCCTGTGCTTCTATTCC
AAATCCCCTGTTTGGCCTGGCTAGAGTAACATGTGGACACTTCCTTGTACCTTTTTGAGCAGCCTTCTTTGGTGCAACCC
TGATAGGAAAAGCCATCATTAAAATGTATAGCCAGAAAATCTTTGTTCTAGTAACTTTCAGCAAGCACATCATGGAGCAG
ATGGTGGCTTTCACTGGTGCTGTCCCCAGCATAGGTCTGTCTCTGCAGAAACCTTTTCAGGAATGCCTGCAGGTGCAGCA
GCAGAAGTGTCATCATAGAAATGAAGCAGGCGCACTGCAGGGAGAAAACTGGTTATCCTGGATGCTTCAGAAGCTGGCTG
TTTTGATGGTGTGTTACTTTATCCTGTCTATCATTAACTCCACGGCACAAGCTATGCCAAATGAATCCAGCAGCACTTGA
ACTCAGAGGAGAAAACTAAA
ORF - retro_mmus_2640 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.82 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MAENGKNCDQRRIAMSKDQHNGSLTDPSSVHEKKRRDREERQNIVLWRQPLITLQYFSLETLVVLKEWTS |
| MAENGKNCDQR..AM.K.QHNGS.TD.SSVHEKKRRDR.ERQNIVLWRQPLITLQYFSLETLVVLKEW.S |
Retrocopy | MAENGKNCDQRHEAMNKEQHNGSFTDHSSVHEKKRRDRKERQNIVLWRQPLITLQYFSLETLVVLKEWIS |
|
Parental | KLWHRQSIVVSFLLLLAALVATYYVEGAHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGP |
| KLWHRQSI.VSFLLLLA.LVA.YYVEGAHQQ.VQ.IEK.FLLYAY.IGLG.LS.VGLGTGLHT.LLYLGP |
Retrocopy | KLWHRQSIAVSFLLLLAVLVAMYYVEGAHQQHVQWIEKPFLLYAY*IGLGSLSFVGLGTGLHTSLLYLGP |
|
Parental | HIASVTLAAYECNSVNFPEPPYPDQIICPEEEGAEGAISLWSIISKVRIEACMWGIGTAIGELPPYFMAR |
| HIASV..AAYECN.VNFPEPPYPDQIICP.EEG.EGAISLW.IISKVRIEACMWG.GTAIGELP.YFMAR |
Retrocopy | HIASVPFAAYECNLVNFPEPPYPDQIICPDEEGTEGAISLWNIISKVRIEACMWGTGTAIGELPLYFMAR |
|
Parental | AARLSGAEPDDEEYQEFEEMLEHAEAAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGH |
| AA.LSGAEPDDEEYQEFEEMLEHAEAAQ..A...KL.VQKLVQKV.FFGILACASIPNPLF.LA..TCGH |
Retrocopy | AACLSGAEPDDEEYQEFEEMLEHAEAAQHCA*QTKLPVQKLVQKV*FFGILACASIPNPLFGLARVTCGH |
|
Parental | FLVPF-WTFFGATLIGKAIIKMHIQKIFVIVTFSKHIVEQMVTFIGAVPGIGPSLQKPFQEYLEAQRQKL |
| FLVPF...FFGATLIGKAIIKM..QKIFV.VTFSKHI.EQMV.F.GAVP.IG.SLQKPFQE.L..Q.QK. |
Retrocopy | FLVPF*AAFFGATLIGKAIIKMYSQKIFVLVTFSKHIMEQMVAFTGAVPSIGLSLQKPFQECLQVQQQKC |
|
Parental | HHRSEAGTPQGENWLSWMFEKLVVAMVCYFVLSIINSMAQ-NYAKRIQQRLNSEEKTK |
| HHR.EAG..QGENWLSWM..KL.V.MVCYF.LSIINS.AQ..YAK.IQQ.LNSEEKTK |
Retrocopy | HHRNEAGALQGENWLSWMLQKLAVLMVCYFILSIINSTAQ<SYAK*IQQHLNSEEKTK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
74 .78 RPM |
SRP007412_cerebellum |
0 .04 RPM |
50 .15 RPM |
SRP007412_heart |
0 .00 RPM |
30 .10 RPM |
SRP007412_kidney |
0 .02 RPM |
65 .83 RPM |
SRP007412_liver |
0 .00 RPM |
69 .23 RPM |
SRP007412_testis |
0 .00 RPM |
14 .82 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_2640 was not detected
No EST(s) were mapped for retro_mmus_2640 retrocopy.
No TSS is located nearby retro_mmus_2640 retrocopy 5' end.
retro_mmus_2640 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_2640 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.