RetrogeneDB ID:

retro_nleu_818

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397273.1:35471771..35472989(-)
Located in intron of:ENSNLEG00000013890
Retrocopy
information
Ensembl ID:ENSNLEG00000013981
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:VMP1
Ensembl ID:ENSNLEG00000000724
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_818
ATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGTGTAGCAATGAACAAGGAACAACATAATGGAAATTTCACAGACCT
CTCTTCAGTGAATGAAAAGAAGAGGAGGGAGCAGGAAGAAAGGCAGAATATTGTCCTGTAGAGACAGCCACTCATTACCT
TGCAGTATTTTTCTCTGGAAATCCTTGTAATCTTGAAGGAATGGACCTCAAAATTATGGCATCGTCAAAGCATTGTGGTG
TCTTTTTTACTGCTGCTTGCTGTGCTTATAGCTACGTATTATGTTGAAGGAGCGCATCAACAGTATGTGCAACGTATAGA
GAAACGGTTTCTTTTGAATGCCTACTGGATAGGCCTAGGAATTTTGTCTTCTGTTGGGCTTGGAACAGGGCTGCACACCT
TTCTGCTTTATCTGGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCTGAACCA
CCCTATCCTGATTAGATTATTTGTCCAGATGAAGGGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGT
TAGGATTGAGGCCTGCATGTGGGGTATAGGTACAGCAATCGGAGAGCTGCCTCCGTATTTCATGGCCAGAGCAGCTCGCC
TCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAAAGATGCTGGAACATGCAGAGTCTGCACAAGACTTT
GCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCC
AAATCCTTTATTTGATCTGGCTGGAATAACATGTTGACACTTTCTGGTACCTTTTCGGACCGTCTTTGGTGCAACCCTAA
TTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATG
GTGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCA
GAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTG
TCATGGTGTGTTACTTCATCCTGTCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGCATCCAGCAGCGGTTGAAC
TCAGAGGAGAAAACTAAA

ORF - retro_nleu_818 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.54 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAENGKNCDQRRVAMNKEQHNGNFTDPSSVNEKKRREREERQNIVLWRQPLITLQYFSLEILVILKEWTS
MAENGKNCDQRRVAMNKEQHNGNFTD.SSVNEKKRRE.EERQNIVL.RQPLITLQYFSLEILVILKEWTS
RetrocopyMAENGKNCDQRRVAMNKEQHNGNFTDLSSVNEKKRREQEERQNIVL*RQPLITLQYFSLEILVILKEWTS
ParentalKLWHRQSIVVSFLLLLAVLIATYYVEGAHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGP
KLWHRQSIVVSFLLLLAVLIATYYVEGAHQQYVQRIEK.FLL.AYWIGLGILSSVGLGTGLHTFLLYLGP
RetrocopyKLWHRQSIVVSFLLLLAVLIATYYVEGAHQQYVQRIEKRFLLNAYWIGLGILSSVGLGTGLHTFLLYLGP
ParentalHIASVTLAAYECNSVNFPEPPYPDQIICPDEGGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMAR
HIASVTLAAYECNSVNFPEPPYPD.IICPDEGGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMAR
RetrocopyHIASVTLAAYECNSVNFPEPPYPD*IICPDEGGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMAR
ParentalAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGH
AARLSGAEPDDEEYQEFE.MLEHAESAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITC.H
RetrocopyAARLSGAEPDDEEYQEFEKMLEHAESAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITC*H
ParentalFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLH
FLVPF.T.FGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLH
RetrocopyFLVPFRTVFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLH
ParentalHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK
HKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK
RetrocopyHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_818 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Monodelphis domestica ENSMODG000000143391 retrocopy
Mus musculus ENSMUSG000000181711 retrocopy
Nomascus leucogenys ENSNLEG00000000724 1 retrocopy
retro_nleu_818 ,
Rattus norvegicus ENSRNOG000000039671 retrocopy
Sarcophilus harrisii ENSSHAG000000162641 retrocopy
Drosophila melanogaster FBgn00526751 retrocopy



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