>retro_mmus_2925
ATTCAGAATGCAGGGGGCTCGATGATGATTCAGCGTGTCAATGGCTCTCTGGCTGGGGATTTCGATTACAAACGTGTCCA
TCGCAAAGGTCCCACAGAGCAGCCTGTCTCACCGAGCCCGAAGTCCATGATATTGAAAGGTCTGAAGAAGATGATCAGTT
GATCATTCTTGCATATGAAGGTATCTGGGACGTCACTGGAAATGAAGAGCTCTGTGACTTTGTGAGATCCAGACTTGAAG
TCACTTATGACCATGAGGAAGTTTGTGATGAAGCAGTAGACACCTGTTTGTATAAGGAAAGTCGAGACACCGTAAGTGCG
ATTTTGATCTGTTTTCCAAATGCACCTAAAGCCTCAGCAGAAGCGGGGAAGAAGGAGGCGGGGCTGAGCGAGTACCTGGA
AAGCAGAGGAGAAGAAATCATTAAGAAGCAGGGGGAAGGCGTCCCTGACTAGTCCATGTGATGTGCATGGTAGCCAGTGA
GCACATCTGCAGCCTCCCACCAGAGGGTGAATTGGCAAGCAAGCAGAAAGTAATTGAAGTCATTTTCAATAAACTAAATA
CTTACAAAAATGATGACACTGATTCTACATCAACTGATGACATGTGG
ORF - retro_mmus_2925 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.15 % |
Parental protein coverage: |
52.09 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | IQRVNGSLAVSRA----LGDFDYKCVHGKGPTEQLVSP-EPEVHDIERSEEDDQFIILACDGIWDVMGNE |
| IQ...GS....R......GDFDYK.VH.KGPTEQ.VSP.EPEVHDIERSEEDDQ.IILA..GIWDV.GNE |
Retrocopy | IQNAGGSMMIQRVNGSLAGDFDYKRVHRKGPTEQPVSP<EPEVHDIERSEEDDQLIILAYEGIWDVTGNE |
|
Parental | ELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPSAPKVSAEAVKKEAELDKYLESRVEE |
| ELCDFVRSRLEVT.D.E.VC.E.VDTCLYK.SRD..S.ILICFP.APK.SAEA.KKEA.L..YLESR.EE |
Retrocopy | ELCDFVRSRLEVTYDHEEVCDEAVDTCLYKESRDTVSAILICFPNAPKASAEAGKKEAGLSEYLESRGEE |
|
Parental | IIKKQVEGVPD-LVHVMRTLASENIPSLPPGGELASKRNVIEAVYNRLNPYKNDDTDSASTDDMW |
| IIKKQ.EGVPD.LVHVM...ASE.I.SLPP.GELASK..VIE...N.LN.YKNDDTDS.STDDMW |
Retrocopy | IIKKQGEGVPD<LVHVMCMVASEHICSLPPEGELASKQKVIEVIFNKLNTYKNDDTDSTSTDDMW |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
146 .81 RPM |
SRP007412_cerebellum |
0 .00 RPM |
124 .75 RPM |
SRP007412_heart |
0 .00 RPM |
115 .21 RPM |
SRP007412_kidney |
0 .00 RPM |
104 .35 RPM |
SRP007412_liver |
0 .00 RPM |
126 .41 RPM |
SRP007412_testis |
0 .59 RPM |
332 .16 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_2925 was not detected
No EST(s) were mapped for retro_mmus_2925 retrocopy.
No TSS is located nearby retro_mmus_2925 retrocopy 5' end.
retro_mmus_2925 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_2925 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.