>retro_mmus_468
ATGGGTGCATTTTTGGATAAACCCAAAACTGAAAAGCACAATGCTCACGGTGCTGGGAATGGTCTGCGTTATGGCCTGAG
CAGTATGCAAGGATGGAGAGTAGAAATGGAAGATGTACACACAGCTGTTGTGGGTATTCCTCATGGCTTGGACAACTGGT
CGTTTTTTGCAGTTTATGATGGTCATGCTGGATCCCGAGTGGCAAATTACTGTTCAACACATCTATTAGAACACATCACC
ACCAATGAAGACTTCAGGGCAGCTGACAAATCAGGCTCTGCTCTCGAGCCTTCAGTAGAAAGTGTGAAGACTGGTATCAG
GACTGGCTTTTTGAAAATTGATGAATATATGCGCAACTTCTCAGACCTGAGGAACGGGATGGACAGGAGCGGCTCGACTG
CAGTGGGCGTGATGGTCTCCCCTACACACATGTACTTCATCAACTGTGGTGACTCTTGAGCTGTTCTGTGTAGGAACGGA
CAGGTCTGCTTTTCTACCCAGGATCACAAACCTTGTAATCCAGTGGAGAAGGAGCGCATCCAAAACGCAGGAGACAGTGT
GATGATCCAGCGTGTGAACGGCTCACTAGCAGTGTCTCGGGCTCTGGGGGACTATGACTACAAGTGTGTGGATGGCAAGG
GCCCTACAGGGCAGCTTGTTTCTCCAGAGCCTGAGGTTTATGAGATTGTGAGAGCAGAAGAGGATGAGTTTGTCGTCTTG
GCCTGTGATGGGATCTGGGATGTGATGAGCAATGAGGAGCTCTGTGAGTTTGTTAAGTCTAGGCTTGAGGTGTCGGACGA
CCTGGAGAATGTGTGCAATTGGGTAGTGGACACTTGTTTACATAAGGGAAGTCGAGATAACATGAGTGTTGTATTAGTTT
GCTTTTCAAATGCCCCCAAGGTCTCAGAGGAAGCCGTGAAGAGAGATTCAGAGTTGTATAAGCACTTGGAATCACGGGTT
GAAGAAATCATGCAGAAGTCTGGGGAGGAAGGAATGCCTGATCTTGCCCATGTGATGCGCATTTTGTCTGCAGAAAATAT
CCCAAATTTACCTCCCGGGGGAGGTCTCGCTGGCAAGCGCCATGTTATTGAAGCTGTTTATAGTAGACTTAATCCACACA
AAGACAATGATGGGGGCGCTGGCGATCTAGAAGACTCATTGGTAGCCTTA
ORF - retro_mmus_468 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.72 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLDNWSFFAVYDGHAGSRVANY |
| MGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMED.HTAVVGIPHGLDNWSFFAVYDGHAGSRVANY |
Retrocopy | MGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDVHTAVVGIPHGLDNWSFFAVYDGHAGSRVANY |
|
Parental | CSTHLLEHITTNEDFRAADKSGSALEPSVESVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMVS |
| CSTHLLEHITTNEDFRAADKSGSALEPSVESVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMVS |
Retrocopy | CSTHLLEHITTNEDFRAADKSGSALEPSVESVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMVS |
|
Parental | PTHMYFINCGDSRAVLCRNGQVCFSTQDHKPCNPVEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCV |
| PTHMYFINCGDS.AVLCRNGQVCFSTQDHKPCNPVEKERIQNAG.SVMIQRVNGSLAVSRALGDYDYKCV |
Retrocopy | PTHMYFINCGDS*AVLCRNGQVCFSTQDHKPCNPVEKERIQNAGDSVMIQRVNGSLAVSRALGDYDYKCV |
|
Parental | DGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCL |
| DGKGPT.QLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCL |
Retrocopy | DGKGPTGQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCL |
|
Parental | HKGSRDNMSVVLVCFSNAPKVSEEAVKRDSELDKHLESRVEEIMQKSGEEGMPDLAHVMRILSAENIPNL |
| HKGSRDNMSVVLVCFSNAPKVSEEAVKRDSEL.KHLESRVEEIMQKSGEEGMPDLAHVMRILSAENIPNL |
Retrocopy | HKGSRDNMSVVLVCFSNAPKVSEEAVKRDSELYKHLESRVEEIMQKSGEEGMPDLAHVMRILSAENIPNL |
|
Parental | PPGGGLAGKRHVIEAVYSRLNPHKDNDGGAGDLEDSLVAL |
| PPGGGLAGKRHVIEAVYSRLNPHKDNDGGAGDLEDSLVAL |
Retrocopy | PPGGGLAGKRHVIEAVYSRLNPHKDNDGGAGDLEDSLVAL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .14 RPM |
55 .70 RPM |
SRP007412_cerebellum |
0 .09 RPM |
90 .23 RPM |
SRP007412_heart |
0 .28 RPM |
70 .54 RPM |
SRP007412_kidney |
0 .48 RPM |
75 .54 RPM |
SRP007412_liver |
0 .11 RPM |
73 .46 RPM |
SRP007412_testis |
0 .59 RPM |
136 .99 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_468 was not detected
No EST(s) were mapped for retro_mmus_468 retrocopy.
No TSS is located nearby retro_mmus_468 retrocopy 5' end.
retro_mmus_468 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_468 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.