RetrogeneDB ID: | retro_mmus_3561 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:169369331..169370003(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081137 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pphln1 | ||
Ensembl ID: | ENSMUSG00000036167 | ||
Aliases: | Pphln1, CR, HSPC206, HSPC232 | ||
Description: | periphilin 1 [Source:MGI Symbol;Acc:MGI:1917029] |
Percent Identity: | 65.78 % |
Parental protein coverage: | 76.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KRDAPFFRESPVGRKDSPHSRSGSSVSSRSYSPERSRTHSFHQSQHRSKERSIQSVKTSRDASPSSSSAV |
KRDAPF.RES..G.K.S.H.RSGS..S.RSY..E.S.TH....SQ...K..S.QS.K.SRD.S...SSAV | |
Retrocopy | KRDAPFVRESTAGWKNSQHNRSGSIISGRSYALEQSKTHLSPKSQNTLKDGSKQSLKISRDNSSPRSSAV |
Parental | ASSKALDKPSRLTEKELAEAESKWANETLEKSDESNLAEMNEFEAGSTAPLFIDQTEEPESNTVDGTELY |
.SSK.LDK...LTEKELAEAESKWANETLE.S....L.E...F...S.APL.IDQTE.P.SNT....... | |
Retrocopy | SSSKMLDKTIKLTEKELAEAESKWANETLEQSNKNHLTEISKFQVRSMAPLVIDQTEGPKSNTENAIAMN |
Parental | EDSQLSNRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSVQFALRQNLHEIGERCVEELKRF |
EDSQLS.R.KAI.SKTK.IE.VY.Q.CETF..VVKML..KDPSL.KS.QFALRQNL.E..ERCVEEL..F | |
Retrocopy | EDSQLSSRTKAIISKTKQIEEVYLQYCETFAIVVKMLLDKDPSLQKSIQFALRQNLQEMSERCVEELNCF |
Parental | ITEYDNSAQDFGDPF |
ITEYDNS.QDFGDPF | |
Retrocopy | ITEYDNS-QDFGDPF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 3 .18 RPM | 30 .37 RPM |
SRP007412_cerebellum | 3 .56 RPM | 25 .23 RPM |
SRP007412_heart | 0 .12 RPM | 15 .60 RPM |
SRP007412_kidney | 0 .15 RPM | 21 .46 RPM |
SRP007412_liver | 0 .03 RPM | 12 .23 RPM |
SRP007412_testis | 4 .25 RPM | 52 .74 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010693 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017726 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012266 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002007 | 1 retrocopy | |
Equus caballus | ENSECAG00000016067 | 1 retrocopy | |
Mus musculus | ENSMUSG00000036167 | 3 retrocopies |
retro_mmus_1657, retro_mmus_3561 , retro_mmus_79,
|
Otolemur garnettii | ENSOGAG00000004012 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010740 | 1 retrocopy |