RetrogeneDB ID: | retro_tsyr_2044 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_82782:4543..5360(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPHLN1 | ||
Ensembl ID: | ENSTSYG00000010740 | ||
Aliases: | None | ||
Description: | periphilin 1 [Source:HGNC Symbol;Acc:19369] |
Percent Identity: | 85.61 % |
Parental protein coverage: | 79.35 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | RRSGPP--HRGDESGYRWTRDDHSASRQPEYRDVRDGFRRKSFYSSHYVRDRSPHKRDAPFF-RESPVGR |
R...PP..H..DESGYRWTRDDHSASRQPEYRDVRDGFRRKSFYSSHYVRDRSPHK.DAPFF.RESPVGR | |
Retrocopy | REQVPPQSHPSDESGYRWTRDDHSASRQPEYRDVRDGFRRKSFYSSHYVRDRSPHKSDAPFF>RESPVGR |
Parental | KDSPHSRSGSSVSSRSYSPERSKTYSFHQSQHRKSVHPGAFFYKRQN-EGKPERGKERPVQSLKTSRDTS |
K.SPHSRSGSSVSSRSYSPERSKTYSFHQSQHRKSVHPGA.F......E....R...RPVQSLKTSR.T. | |
Retrocopy | KNSPHSRSGSSVSSRSYSPERSKTYSFHQSQHRKSVHPGA-FFYKRQ<E*RKARKR*RPVQSLKTSRGT* |
Parental | PSSSSAVPSSK---KPSRLSEKELVEAASKWAAE-KLEKSDESNLPEISEFETGSTAPLFIDQPEEPESN |
PSSSSAVPSS....KPSRLSEKELVEAA.KWAAE.KLEKSDES.LPEISEFETGSTAPLFID.PEEP.SN | |
Retrocopy | PSSSSAVPSSEVLDKPSRLSEKELVEAANKWAAE<KLEKSDESSLPEISEFETGSTAPLFID*PEEPQSN |
Parental | ATDGIELFEDSQLTSRSKAIAS-KTKEIEEVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEI |
ATDG.EL.EDSQLTSRSKAIAS.KTKEIE.VYRQDCETFGMVVKMLIEKDPSLEKSIQFA.RQNLHEI | |
Retrocopy | ATDGTELLEDSQLTSRSKAIAS<KTKEIEDVYRQDCETFGMVVKMLIEKDPSLEKSIQFAFRQNLHEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010693 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017726 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012266 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002007 | 1 retrocopy | |
Equus caballus | ENSECAG00000016067 | 1 retrocopy | |
Mus musculus | ENSMUSG00000036167 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000004012 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010740 | 1 retrocopy |
retro_tsyr_2044 ,
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