Parental gene: | PPHLN1, ENSDNOG00000002007 |
| Aliases: | None |
| Description: | periphilin 1 [Source:HGNC Symbol;Acc:19369] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_6692:8410..134998(+) |
>ENSDNOG00000002007
ATGTGGTCTGAGGGAAGATATGACTATGAAAGACTTCCAAGAGAAAGACTGCCTCCTCGGAGTCACCCCAGTGATGGCGT
CCATAGAGTAGTTAATATTGTGCCAAAGAAACCACCACTGCTAGACAGACCTGGTGAAGGAAGCTACAATAGATATAACA
GTCATGTTGATTACCGAGACTATGACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGGCCACCTCACAGAGGAGAT
GAATCTAGCTATAGATGGCCAAGAGATGATCATTCTGCAAGTCGACAGCCAGAATATAGGGACGTGAGAGATGGCTTTAG
AAGAAAAAGTTTCTATTCTTCCCATTATGCGAGAGATCGATCTCCTCATAAAAGGGACAATTCTTATCTCAGAGAATCAC
CTGTAGGCCGAAAGGATTCTTCACACAGCAGATCTGGCTCCAGTGTCAGCAGCAGAAGCTACTCTCCAGAAAGAAGCAAA
ACATATTCTCATCAATCTCAACATAGAAAGTCCGTGCGTGCCGGTGCATCCTACAAACGGCAGAATGAAGGAAAGCCAGA
AAGAGGTAAAGAGAGACCTTTACAGGCTATGAAAACATCAGGAGATACTTCACCCTCAAGTTCTTCAGCAGTTACTTCAT
CAAAGGTGTTAGACAAGCCCAGTAGGCTAACTGAAAAGGAACTTGCTGAGGCTGCCAGCAAATGGGCTGCTGAAAAGGTA
GAGAAGGGAGATGAAAGCAACTTACCTGAGATTTCTGAGTATGAGGCGGGATCCACAGCACCATTGTTTATTGACCAGCC
AGAAGAACCTGAGTCAAATGCAAAAGATGGCATAGAATTATTTGAAGACAGTCAGCTAACCAGCCGCTCTAAAGCAATAG
CATCAAAAACCAAAGAGATTGAACAG
ATGTGGTCTGAGGGAAGATATGACTATGAAAGACTTCCAAGAGAAAGACTGCCTCCTCGGAGTCACCCCAGTGATGGCGT
CCATAGAGTAGTTAATATTGTGCCAAAGAAACCACCACTGCTAGACAGACCTGGTGAAGGAAGCTACAATAGATATAACA
GTCATGTTGATTACCGAGACTATGACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGGCCACCTCACAGAGGAGAT
GAATCTAGCTATAGATGGCCAAGAGATGATCATTCTGCAAGTCGACAGCCAGAATATAGGGACGTGAGAGATGGCTTTAG
AAGAAAAAGTTTCTATTCTTCCCATTATGCGAGAGATCGATCTCCTCATAAAAGGGACAATTCTTATCTCAGAGAATCAC
CTGTAGGCCGAAAGGATTCTTCACACAGCAGATCTGGCTCCAGTGTCAGCAGCAGAAGCTACTCTCCAGAAAGAAGCAAA
ACATATTCTCATCAATCTCAACATAGAAAGTCCGTGCGTGCCGGTGCATCCTACAAACGGCAGAATGAAGGAAAGCCAGA
AAGAGGTAAAGAGAGACCTTTACAGGCTATGAAAACATCAGGAGATACTTCACCCTCAAGTTCTTCAGCAGTTACTTCAT
CAAAGGTGTTAGACAAGCCCAGTAGGCTAACTGAAAAGGAACTTGCTGAGGCTGCCAGCAAATGGGCTGCTGAAAAGGTA
GAGAAGGGAGATGAAAGCAACTTACCTGAGATTTCTGAGTATGAGGCGGGATCCACAGCACCATTGTTTATTGACCAGCC
AGAAGAACCTGAGTCAAATGCAAAAGATGGCATAGAATTATTTGAAGACAGTCAGCTAACCAGCCGCTCTAAAGCAATAG
CATCAAAAACCAAAGAGATTGAACAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 13 .81 RPM |
| SRP012922_cerebellum | 8 .52 RPM |
| SRP012922_heart | 4 .87 RPM |
| SRP012922_kidney | 4 .38 RPM |
| SRP012922_liver | 5 .57 RPM |
| SRP012922_lung | 11 .30 RPM |
| SRP012922_quadricep_muscle | 3 .98 RPM |
| SRP012922_spleen | 19 .12 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000010693 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017726 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000012266 | ortholog_one2many | 2 retrogenes | |
| Equus caballus | ENSECAG00000016067 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000036167 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004012 | ortholog_one2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010740 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_1790 | 79.46 | 73.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000002007 retrocopies