Parental gene: | PPHLN1, ENSECAG00000016067 |
| Aliases: | None |
| Description: | periphilin 1 [Source:HGNC Symbol;Acc:19369] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 6:61141374..61201545(+) |
>ENSECAG00000016067
AGGGACATGAGAGATGGCTTTAGAAGAAAAGGTTTCTACTCTTCCCATTATGTGAGAGACCGGTCTCCTCATAAAAGAGA
CACACCGTTCTTCAGAGAATCACCTGTAGGCCGAAAGGAATCTCCACACAGCAGATCTGGCTCCAGTGTCAGTAGTAGAA
GCTACTCCCCAGAAAGAAGCAAAACGTATTCTTTCCATCAATCTCAACACAGAAAGTCCGTGCGTGCTGGTGCCTCCTAC
AAACGGCAGAATCAAGGAAAGCCAGAAAGAGGTAAAGAGAGACCTGTTCAGTCTTTGAAAACATCAAGAGACACTTCACC
CTCAAGTTCTTCAGCAGTTCCTTCATCAAAGGTGTTAGACAAACCCAGTAGGCTAACTGAAAAGGAACTTGCTGAGGCTG
CAAGCAAGTGGGCTGCTGAAAAGCTAGAGAAGGCGGATGAGAGTAACTTACCTGAAATTTCTGAGTATGAGGCGGGATCC
ACGGCACCACTGTTCATTGACCAGACAGAAGAACCTGAGTCAAATGCAACAGATGGCATAGAATTATTTGAAGACAGTCA
GCTAACCAGTCGCTCTAAAGCTATAGCATCAAAAACCAAAGAGATTGAACAGGTTTACCGACAAGACTGTGAAACTTTCG
GGATGGTTGTGAAAATGCTGATTGAAAAGGATCCTTCACTAGAAAAGTCTATCCAGTTTGCACTGAGACAGAATTTACAT
GAAATAGGTGAGCGCTGTGTTGAAGAGCTCAAGCATTTCATTGCAGAGTATGACACCTCTAGTCAGGATTTTGGAGAGCC
TTTTTAG
AGGGACATGAGAGATGGCTTTAGAAGAAAAGGTTTCTACTCTTCCCATTATGTGAGAGACCGGTCTCCTCATAAAAGAGA
CACACCGTTCTTCAGAGAATCACCTGTAGGCCGAAAGGAATCTCCACACAGCAGATCTGGCTCCAGTGTCAGTAGTAGAA
GCTACTCCCCAGAAAGAAGCAAAACGTATTCTTTCCATCAATCTCAACACAGAAAGTCCGTGCGTGCTGGTGCCTCCTAC
AAACGGCAGAATCAAGGAAAGCCAGAAAGAGGTAAAGAGAGACCTGTTCAGTCTTTGAAAACATCAAGAGACACTTCACC
CTCAAGTTCTTCAGCAGTTCCTTCATCAAAGGTGTTAGACAAACCCAGTAGGCTAACTGAAAAGGAACTTGCTGAGGCTG
CAAGCAAGTGGGCTGCTGAAAAGCTAGAGAAGGCGGATGAGAGTAACTTACCTGAAATTTCTGAGTATGAGGCGGGATCC
ACGGCACCACTGTTCATTGACCAGACAGAAGAACCTGAGTCAAATGCAACAGATGGCATAGAATTATTTGAAGACAGTCA
GCTAACCAGTCGCTCTAAAGCTATAGCATCAAAAACCAAAGAGATTGAACAGGTTTACCGACAAGACTGTGAAACTTTCG
GGATGGTTGTGAAAATGCTGATTGAAAAGGATCCTTCACTAGAAAAGTCTATCCAGTTTGCACTGAGACAGAATTTACAT
GAAATAGGTGAGCGCTGTGTTGAAGAGCTCAAGCATTTCATTGCAGAGTATGACACCTCTAGTCAGGATTTTGGAGAGCC
TTTTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 6 .97 RPM |
| SRP021940_embryo | 12 .25 RPM |
| SRP021940_cerebellum | 0 .26 RPM |
| SRP021940_testis | 3 .33 RPM |
| SRP021940_placental_villous | 9 .43 RPM |
| SRP021940_articular_cartilage | 0 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000010693 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017726 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000012266 | ortholog_one2many | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000002007 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000036167 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004012 | ortholog_one2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010740 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_209 | 83.33 | 51.49 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000016067 retrocopies